C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear prelamin A recognition factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000582907 NARF-019 ENSG00000141562 9606 + 17:82458726-82488065 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000582907
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000582907 0.486±0.00 4.655±3.64 1.432±0.00 5.069±3.27 3.920±3.17 2.561±2.11 1.404±0.00 1.405±0.00 15.964±0.00 4.171±1.09 18.827±7.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043T CIL_00043T_0002 CGP 17:82442589-82490537
CIL_00054L CIL_00054L_0001 CGP 17:82458180-82644662

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103015 Narf-001 protein_coding Mus_musculus 0 675
ENSMUST00000154047 Narf-002 retained_intron Mus_musculus 0 291
ENSMUST00000151088 Narf-003 retained_intron Mus_musculus 9e-35 152

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