C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear prelamin A recognition factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345415 NARF-007 ENSG00000141562 9606 + 17:82458649-82488262 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartMuscleOvaryPlacentaTestisENST00000345415
Transcript ID Colon Heart Muscle Ovary Placenta Testis
ENST00000345415 0.805±0.00 0.634±0.00 3.046±0.00 3.779±3.08 3.125±0.28 10.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043T CIL_00043T_0002 CGP 17:82442589-82490537
CIL_00054L CIL_00054L_0001 CGP 17:82458180-82644662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005521 IPI lamin binding
GO:0005634 IDA nucleus
GO:0005638 IDA lamin filament
GO:0005652 TAS nuclear lamina
GO:0031981 IDA nuclear lumen

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103015 Narf-001 protein_coding Mus_musculus 0 1013
ENSMUST00000154047 Narf-002 retained_intron Mus_musculus 0 422
ENSMUST00000151088 Narf-003 retained_intron Mus_musculus 0 189

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