C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear prelamin A recognition factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000390006 NARF-006 ENSG00000141562 9606 + 17:82458185-82488255 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000390006
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000390006 7.109±0.00 15.738±0.00 4.397±3.20 6.055±0.00 13.141±0.00 6.789±6.14 8.132±0.00 8.506±0.00 5.443±0.00 4.598±3.03 8.385±1.87 7.176±1.33 16.732±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043T CIL_00043T_0002 CGP 17:82442589-82490537
CIL_00054L CIL_00054L_0001 CGP 17:82458180-82644662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005521 IPI lamin binding
GO:0005634 IDA nucleus
GO:0005638 IDA lamin filament
GO:0005652 TAS nuclear lamina
GO:0031981 IDA nuclear lumen

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103015 Narf-001 protein_coding Mus_musculus 0 1170
ENSMUST00000154047 Narf-002 retained_intron Mus_musculus 0 422
ENSMUST00000151088 Narf-003 retained_intron Mus_musculus 1.4013e-45 189

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