C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: transmembrane protein 50B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442441 TMEM50B-004 ENSG00000142188 9606 - 21:33450547-33479936 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000442441
Transcript ID Ovary Placenta Testis
ENST00000442441 18.949±0.00 10.790±0.00 29.098±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WY CIL_0003WY_0001 CGP 21:33324477-33479348
CIL_0003V2 CIL_0003V2_0001 CGP 21:33402896-33480011
CIL_00021F CIL_00021F_0001 CGP 21:33432485-33491720

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023686 Tmem50b-001 protein_coding Mus_musculus 0 416
ENSMUST00000141885 Tmem50b-002 nonsense_mediated_decay Mus_musculus 0 324
ENSMUST00000133180 Tmem50b-003 nonsense_mediated_decay Mus_musculus 4e-37 159

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