C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: arginine glutamic acid dipeptide (RE) repeats
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039852 Rere 10090 + 4:150281646-150621966 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000105680 Rere-003 150488393-150621962 protein_coding
  ENSMUST00000105682 Rere-001 150281646-150621966 protein_coding
  ENSMUST00000129188 Rere-002 150281812-150282466 processed_transcript
  ENSMUST00000131600 Rere-008 150406394-150470381 protein_coding
  ENSMUST00000136646 Rere-007 150617266-150619828 protein_coding
  ENSMUST00000137112 Rere-005 150569657-150612069 processed_transcript
  ENSMUST00000142379 Rere-004 150569588-150570495 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105680ENSMUST00000105682ENSMUST00000136646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105680 7.972±1.89 13.698±3.61 10.554±6.93 9.016±4.02 9.647±2.85 10.017±1.40 3.184±1.34 13.143±1.62 1.645±1.04 8.807±1.34 10.017±4.56 5.888±4.09 5.197±0.84 2.867±0.54
ENSMUST00000105682 2.022±0.97 3.506±1.43 3.175±1.57 8.820±3.96 1.039±0.48 1.750±0.04 0.817±0.27 1.888±0.07 0.696±0.28 2.053±0.03 1.723±0.22 4.172±5.48 6.116±3.03 4.581±0.57
ENSMUST00000136646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.924±2.04 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MK CIL_0003MK_0002 CGP 4:150236721-150621966

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IPI histone deacetylase complex
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0006338 IPI chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077353 rerea arginine-glutamic acid dipeptide (RE) repeats a protein_coding Danio_rerio
ENSG00000142599 RERE arginine-glutamic acid dipeptide (RE) repeats protein_coding Homo_sapiens

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