C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396651 RPS8-001 ENSG00000142937 9606 + 1:44775437-44778779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396651
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396651 390.495±0.00 536.234±0.00 39.093±0.00 98.074±24.01 234.939±30.59 315.628±144.98 115.171±71.38 242.397±118.43 208.500±24.06 374.822±261.80 235.813±133.34 1024.753±1172.82 1058.344±652.30 305.146±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0001 VISTA 1:44224152-44825477
CIL_000638 CIL_000638_0002 CGP 1:44775251-44787705

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000462 IBA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102696 Rps8-001 protein_coding Mus_musculus 0 900
ENSMUST00000133910 Gm15501-002 processed_transcript Mus_musculus 0 843
ENSMUST00000140687 Gm15501-001 transcribed_processed_pseudogene Mus_musculus 0 800
ENSMUST00000180940 Gm11353-001 processed_pseudogene Mus_musculus 0 795
ENSMUST00000122418 Gm14323-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000118709 Rps8-ps2-001 processed_pseudogene Mus_musculus 0 778
ENSMUST00000121572 Gm14438-001 processed_pseudogene Mus_musculus 0 778
ENSMUST00000085711 Gm5121-201 processed_pseudogene Mus_musculus 0 739
ENSMUST00000092523 Gm10712-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000120833 Gm14414-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000118252 Gm5687-001 processed_pseudogene Mus_musculus 0 695
ENSMUST00000186115 RP23-393D20.3-001 processed_pseudogene Mus_musculus 0 695
ENSMUST00000172445 Rps8-ps1-201 processed_pseudogene Mus_musculus 0 593
ENSMUST00000144051 Rps8-007 retained_intron Mus_musculus 0 531
ENSMUST00000189312 RP24-160J12.4-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000140226 Rps8-002 retained_intron Mus_musculus 0 370
ENSMUST00000127037 Rps8-004 retained_intron Mus_musculus 0 337
ENSMUST00000191349 RP24-160E3.1-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000137423 Rps8-005 retained_intron Mus_musculus 0 298
ENSMUST00000141219 Rps8-006 retained_intron Mus_musculus 0 287

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