C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3 component n-recognin 3 (putative)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144357 UBR3 9606 + 2:169827458-170084131 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272793 UBR3-001 169827458-170084131 protein_coding
  ENST00000392632 UBR3-008 169946310-170084120 protein_coding
  ENST00000418381 UBR3-201 169827508-170084127 protein_coding
  ENST00000430321 UBR3-003 169928861-170084131 nonsense_mediated_decay
  ENST00000439681 UBR3-007 170001373-170082259 protein_coding
  ENST00000444475 UBR3-005 170008840-170084131 nonsense_mediated_decay
  ENST00000465630 UBR3-006 170014040-170029435 processed_transcript
  ENST00000474426 UBR3-004 170014803-170084131 retained_intron
  ENST00000477461 UBR3-009 169947409-169949892 retained_intron
  ENST00000484596 UBR3-011 170080024-170081855 retained_intron
  ENST00000487689 UBR3-010 169949482-169958521 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272793ENST00000392632ENST00000418381ENST00000439681ENST00000444475ENST00000487689
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272793 1.772±0.00 N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A N/A N/A 0.924±0.00 2.966±0.00
ENST00000392632 N/A 1.864±0.00 N/A 2.964±0.13 3.539±0.00 3.281±0.00 6.407±0.00 3.171±0.00 2.160±0.00 2.445±0.00 19.572±0.00 1.535±0.31 1.257±0.07 3.296±0.00
ENST00000418381 4.946±0.00 2.824±0.00 2.396±0.00 4.575±2.96 5.124±1.12 3.483±0.00 9.509±5.52 3.596±1.72 4.043±2.88 1.984±0.20 15.228±10.62 2.870±1.12 1.161±0.38 3.341±1.55
ENST00000439681 N/A N/A 2.499±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444475 N/A 2.184±0.00 N/A N/A N/A N/A N/A 1.488±0.00 0.984±0.00 N/A N/A 3.034±0.00 N/A N/A
ENST00000487689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.226±0.00 14.219±0.00 24.785±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0001 VISTA 2:169713097-170314655
CIL_0004SI CIL_0004SI_0001 CGP 2:169810081-170084131
CIL_0004SH CIL_0004SH_0001 CGP 2:169827458-170655171

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001967 ISS suckling behavior
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0007608 ISS sensory perception of smell
GO:0008270 IEA zinc ion binding
GO:0009790 ISS embryo development
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042048 IEA olfactory behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042508 ubr3 ubiquitin protein ligase E3 component n-recognin 3 protein_coding Danio_rerio
ENSDARG00000089532 CABZ01051288.2 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000044308 Ubr3 ubiquitin protein ligase E3 component n-recognin 3 protein_coding Mus_musculus

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