C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 3 (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418381 UBR3-201 ENSG00000144357 9606 + 2:169827508-170084127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000418381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000418381 4.946±0.00 2.824±0.00 2.396±0.00 4.575±2.96 5.124±1.12 3.483±0.00 9.509±5.52 3.596±1.72 4.043±2.88 1.984±0.20 15.228±10.62 2.870±1.12 1.161±0.38 3.341±1.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0001 VISTA 2:169713097-170314655
CIL_0004SI CIL_0004SI_0001 CGP 2:169810081-170084131
CIL_0004SH CIL_0004SH_0001 CGP 2:169827458-170655171

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001967 ISS suckling behavior
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0007608 ISS sensory perception of smell
GO:0008270 IEA zinc ion binding
GO:0009790 ISS embryo development
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042048 IEA olfactory behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055758 Ubr3-001 protein_coding Mus_musculus 0 7810
ENSMUST00000112251 Ubr3-201 protein_coding Mus_musculus 0 7734
ENSMUST00000126165 Ubr3-005 processed_transcript Mus_musculus 0 2037
ENSMUST00000131553 Ubr3-002 protein_coding Mus_musculus 0 1910
ENSMUST00000152610 Ubr3-009 protein_coding Mus_musculus 0 963
ENSMUST00000142563 Ubr3-004 processed_transcript Mus_musculus 0 833
ENSMUST00000123890 Ubr3-003 processed_transcript Mus_musculus 0 776
ENSMUST00000150301 Ubr3-007 processed_transcript Mus_musculus 0 494
ENSMUST00000125608 Ubr3-006 processed_transcript Mus_musculus 0 294

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