C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3 component n-recognin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044308 Ubr3 10090 + 2:69897246-70024013 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055758 Ubr3-001 69897246-70024013 protein_coding
  ENSMUST00000112251 Ubr3-201 69897246-70024013 protein_coding
  ENSMUST00000123890 Ubr3-003 70020512-70022220 processed_transcript
  ENSMUST00000125608 Ubr3-006 70000509-70009326 processed_transcript
  ENSMUST00000126165 Ubr3-005 69993712-70022545 processed_transcript
  ENSMUST00000131553 Ubr3-002 69897303-69938659 protein_coding
  ENSMUST00000136543 Ubr3-008 70020128-70021186 processed_transcript
  ENSMUST00000142563 Ubr3-004 69935969-69945301 processed_transcript
  ENSMUST00000150301 Ubr3-007 70009007-70016465 processed_transcript
  ENSMUST00000152610 Ubr3-009 69988786-70009188 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055758ENSMUST00000112251ENSMUST00000126165ENSMUST00000131553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055758 8.422±2.53 8.140±1.04 7.067±0.13 9.672±1.11 7.713±1.97 5.267±1.41 15.535±1.38 8.102±1.55 5.638±2.42 8.340±2.81 31.626±2.40 6.599±1.67 5.226±0.94 1.687±0.82
ENSMUST00000112251 N/A N/A 2.095±0.32 2.783±0.90 N/A N/A N/A N/A 0.854±0.21 N/A 7.692±0.91 N/A 2.354±0.51 N/A
ENSMUST00000126165 4.158±0.00 N/A 5.029±0.77 N/A N/A N/A N/A N/A 2.301±0.28 N/A N/A N/A 3.492±0.00 1.812±0.00
ENSMUST00000131553 N/A 30.524±17.80 N/A N/A 7.246±1.77 N/A N/A N/A N/A N/A N/A 8.525±1.95 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SI CIL_0004SI_0002 CGP 2:69871198-70024013
CIL_0004SH CIL_0004SH_0002 CGP 2:69897246-70429198

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001967 IMP suckling behavior
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0007608 IMP sensory perception of smell
GO:0008270 IEA zinc ion binding
GO:0009790 IMP embryo development
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042048 IMP olfactory behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042508 ubr3 ubiquitin protein ligase E3 component n-recognin 3 protein_coding Danio_rerio
ENSDARG00000089532 CABZ01051288.2 Uncharacterized protein protein_coding Danio_rerio
ENSG00000144357 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) protein_coding Homo_sapiens

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