C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: contactin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144619 CNTN4 9606 + 3:2098813-3057956 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397459 CNTN4-002 2892215-3056355 protein_coding
  ENST00000397461 CNTN4-001 2238829-3057953 protein_coding
  ENST00000418658 CNTN4-009 2098926-3057953 protein_coding
  ENST00000422330 CNTN4-004 2098813-2745687 protein_coding
  ENST00000427331 CNTN4-201 2571341-3057956 protein_coding
  ENST00000427741 CNTN4-003 2098866-3042995 nonsense_mediated_decay
  ENST00000430505 CNTN4-010 2511589-3037676 retained_intron
  ENST00000434053 CNTN4-011 2511670-2745697 protein_coding
  ENST00000438282 CNTN4-006 2511350-2989013 retained_intron
  ENST00000455083 CNTN4-005 2098888-2736323 protein_coding
  ENST00000473058 CNTN4-013 2866420-2887224 processed_transcript
  ENST00000473173 CNTN4-014 2882739-2887095 retained_intron
  ENST00000473845 CNTN4-015 2900711-2927631 protein_coding
  ENST00000475817 CNTN4-017 2900714-2999144 processed_transcript
  ENST00000480113 CNTN4-012 2735873-2745627 retained_intron
  ENST00000484686 CNTN4-016 3039624-3057953 retained_intron
  ENST00000490876 CNTN4-007 2098928-2099773 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397459ENST00000397461ENST00000418658ENST00000422330ENST00000427331ENST00000430505ENST00000434053ENST00000438282ENST00000473058ENST00000473845ENST00000475817ENST00000484686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397459 0.280±0.00 0.826±0.00 N/A 1.982±0.00 0.795±0.00 N/A 0.272±0.03 N/A 0.661±0.00 0.502±0.00 0.211±0.00 0.250±0.10 0.614±0.17 10.979±1.78
ENST00000397461 0.362±0.00 0.934±0.00 N/A 0.647±0.04 0.327±0.00 0.419±0.00 0.253±0.00 0.512±0.00 N/A 0.388±0.00 N/A 0.161±0.05 N/A N/A
ENST00000418658 N/A N/A N/A 0.727±0.00 0.462±0.00 0.469±0.00 N/A N/A N/A 0.413±0.00 N/A N/A N/A 0.803±0.00
ENST00000422330 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.467±0.00 N/A N/A N/A N/A
ENST00000427331 N/A N/A N/A 0.861±0.00 N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A 0.188±0.00 N/A
ENST00000430505 N/A N/A 0.538±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.265±0.00 N/A N/A
ENST00000438282 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.419±0.00 N/A N/A N/A N/A
ENST00000473058 N/A N/A N/A N/A N/A N/A 0.673±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000473845 N/A N/A N/A N/A N/A N/A N/A N/A 2.001±0.00 N/A N/A N/A N/A N/A
ENST00000475817 N/A N/A 2.633±0.00 6.115±0.00 3.018±0.00 N/A 0.476±0.00 N/A N/A N/A 1.486±0.00 N/A N/A N/A
ENST00000484686 N/A N/A N/A N/A N/A 0.904±0.00 N/A 0.030±0.00 0.421±0.30 N/A 0.095±0.00 N/A 0.497±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050H CIL_00050H_0001 CGP 3:1092576-3057956
CIL_0007CD CIL_0007CD_0001 CGP 3:2098813-3126613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005886 NAS plasma membrane
GO:0007158 TAS neuron cell-cell adhesion
GO:0007399 IMP nervous system development
GO:0007409 TAS axonogenesis
GO:0007411 TAS axon guidance
GO:0007413 TAS axonal fasciculation
GO:0007420 ISS brain development
GO:0030424 NAS axon
GO:0031175 ISS neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0045665 IMP negative regulation of neuron differentiation
GO:0048167 TAS regulation of synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019405 cntn4 contactin 4 protein_coding Danio_rerio
ENSDARG00000062880 cntn3a.1 contactin 3a, tandem duplicate 1 protein_coding Danio_rerio
ENSMUSG00000064293 Cntn4 contactin 4 protein_coding Mus_musculus

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