C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: contactin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000064293 Cntn4 10090 + 6:105677660-106699310 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079416 Cntn4-006 106119006-106673487 protein_coding
  ENSMUST00000089208 Cntn4-001 105677775-106699310 protein_coding
  ENSMUST00000113258 Cntn4-005 106118765-106618945 protein_coding
  ENSMUST00000113260 Cntn4-007 105924800-106674270 protein_coding
  ENSMUST00000113261 Cntn4-004 105677745-106674264 protein_coding
  ENSMUST00000113264 Cntn4-201 105677745-106699305 protein_coding
  ENSMUST00000123596 Cntn4-010 106679270-106680242 retained_intron
  ENSMUST00000125904 Cntn4-002 106118918-106525530 processed_transcript
  ENSMUST00000130040 Cntn4-003 106119055-106345739 processed_transcript
  ENSMUST00000132044 Cntn4-009 105677660-105840506 processed_transcript
  ENSMUST00000132395 Cntn4-008 106513558-106697756 processed_transcript
  ENSMUST00000142626 Cntn4-011 106694153-106697900 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079416ENSMUST00000089208ENSMUST00000113258ENSMUST00000113260ENSMUST00000113261ENSMUST00000113264ENSMUST00000123596ENSMUST00000125904ENSMUST00000132044ENSMUST00000132395ENSMUST00000142626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079416 N/A N/A N/A N/A N/A N/A N/A 0.070±0.02 N/A N/A N/A 0.211±0.00 N/A N/A
ENSMUST00000089208 0.027±0.01 N/A 1.226±0.65 1.589±0.08 N/A 0.047±0.00 0.006±0.00 N/A 0.012±0.01 0.057±0.01 0.005±0.00 0.250±0.12 0.015±0.00 0.021±0.01
ENSMUST00000113258 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.164±0.06 N/A N/A
ENSMUST00000113260 N/A 0.051±0.00 N/A 2.642±0.00 N/A 0.092±0.05 N/A 0.055±0.00 0.008±0.00 N/A N/A 0.412±0.14 0.016±0.00 0.051±0.01
ENSMUST00000113261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A
ENSMUST00000113264 N/A N/A 0.792±0.00 0.902±0.19 N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A N/A 0.089±0.00
ENSMUST00000123596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A
ENSMUST00000125904 N/A N/A N/A N/A N/A 0.134±0.09 N/A N/A 0.008±0.00 N/A N/A 0.525±0.22 N/A N/A
ENSMUST00000132044 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A 0.067±0.00 N/A
ENSMUST00000132395 N/A N/A N/A 4.110±0.00 0.042±0.02 0.039±0.00 0.023±0.01 N/A 0.002±0.00 0.120±0.00 N/A 0.516±0.34 0.011±0.01 0.069±0.05
ENSMUST00000142626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050H CIL_00050H_0002 CGP 6:104492790-106699310
CIL_0007CD CIL_0007CD_0002 CGP 6:105677660-106745109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007399 ISS nervous system development
GO:0007420 ISS brain development
GO:0031175 ISS neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0045665 ISS negative regulation of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019405 cntn4 contactin 4 protein_coding Danio_rerio
ENSDARG00000062880 cntn3a.1 contactin 3a, tandem duplicate 1 protein_coding Danio_rerio
ENSG00000144619 CNTN4 contactin 4 protein_coding Homo_sapiens

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