C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007CD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144619-ENSG00000091181 CGP 9606 3:2098813-3126613
GeneTranscriptPositionBiotype
ENSG00000144619 (CNTN4)
contactin 4 		ENST00000397459 (CNTN4-002) 2892215-3056355 protein_coding
ENST00000397461 (CNTN4-001) 2238829-3057953 protein_coding
ENST00000418658 (CNTN4-009) 2098926-3057953 protein_coding
ENST00000422330 (CNTN4-004) 2098813-2745687 protein_coding
ENST00000427331 (CNTN4-201) 2571341-3057956 protein_coding
ENST00000427741 (CNTN4-003) 2098866-3042995 nonsense_mediated_decay
ENST00000430505 (CNTN4-010) 2511589-3037676 retained_intron
ENST00000434053 (CNTN4-011) 2511670-2745697 protein_coding
ENST00000438282 (CNTN4-006) 2511350-2989013 retained_intron
ENST00000455083 (CNTN4-005) 2098888-2736323 protein_coding
ENST00000473058 (CNTN4-013) 2866420-2887224 processed_transcript
ENST00000473173 (CNTN4-014) 2882739-2887095 retained_intron
ENST00000473845 (CNTN4-015) 2900711-2927631 protein_coding
ENST00000475817 (CNTN4-017) 2900714-2999144 processed_transcript
ENST00000480113 (CNTN4-012) 2735873-2745627 retained_intron
ENST00000484686 (CNTN4-016) 3039624-3057953 retained_intron
ENST00000490876 (CNTN4-007) 2098928-2099773 processed_transcript
ENSG00000225310 (DNAJC19P4)
DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 4 		ENST00000440115 (DNAJC19P4-001) 2985231-2985575 processed_pseudogene
ENSG00000227588 (CNTN4-AS2)
CNTN4 antisense RNA 2 		ENST00000447256 (CNTN4-AS2-001) 2110409-2144241 lincRNA
ENSG00000230398 (HINT2P1)
histidine triad nucleotide binding protein 2 pseudogene 1 		ENST00000419438 (HINT2P1-001) 2362258-2362738 processed_pseudogene
ENSG00000237990 (CNTN4-AS1)
CNTN4 antisense RNA 1 		ENST00000442749 (CNTN4-AS1-001) 3039033-3061145 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007CD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000064293-ENSMUSG00000005364 CGP 10090 6:105677660-106745109
GeneTranscriptPositionBiotype
ENSMUSG00000005364 (Il5ra)
interleukin 5 receptor, alpha 		ENSMUST00000167925 (Il5ra-201) 106711975-106745109 protein_coding
ENSMUSG00000064293 (Cntn4)
contactin 4 		ENSMUST00000079416 (Cntn4-006) 106119006-106673487 protein_coding
ENSMUST00000089208 (Cntn4-001) 105677775-106699310 protein_coding
ENSMUST00000113258 (Cntn4-005) 106118765-106618945 protein_coding
ENSMUST00000113260 (Cntn4-007) 105924800-106674270 protein_coding
ENSMUST00000113261 (Cntn4-004) 105677745-106674264 protein_coding
ENSMUST00000113264 (Cntn4-201) 105677745-106699305 protein_coding
ENSMUST00000123596 (Cntn4-010) 106679270-106680242 retained_intron
ENSMUST00000125904 (Cntn4-002) 106118918-106525530 processed_transcript
ENSMUST00000130040 (Cntn4-003) 106119055-106345739 processed_transcript
ENSMUST00000132044 (Cntn4-009) 105677660-105840506 processed_transcript
ENSMUST00000132395 (Cntn4-008) 106513558-106697756 processed_transcript
ENSMUST00000142626 (Cntn4-011) 106694153-106697900 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CD_0001ENSG00000144619ENST00000397459ENST00000397461ENST00000418658ENST00000422330ENST00000427331ENST00000427741ENST00000430505ENST00000434053ENST00000438282ENST00000455083ENST00000473058ENST00000473173ENST00000473845ENST00000475817ENST00000480113ENST00000484686ENST00000490876ENSG00000225310ENST00000440115ENSG00000227588ENST00000447256ENSG00000230398ENST00000419438ENSG00000237990ENST00000442749CIL_0007CD_0002ENSMUSG00000005364ENSMUST00000167925ENSMUSG00000064293ENSMUST00000079416ENSMUST00000089208ENSMUST00000113258ENSMUST00000113260ENSMUST00000113261ENSMUST00000113264ENSMUST00000123596ENSMUST00000125904ENSMUST00000130040ENSMUST00000132044ENSMUST00000132395ENSMUST00000142626
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CD_0001ENSG00000144619ENST00000397459ENST00000397461ENST00000418658ENST00000422330ENST00000427331ENST00000430505ENST00000434053ENST00000438282ENST00000473058ENST00000473845ENST00000475817ENST00000484686ENSG00000225310ENST00000440115ENSG00000227588ENST00000447256ENSG00000230398ENST00000419438ENSG00000237990ENST00000442749CIL_0007CD_0002ENSMUSG00000005364ENSMUST00000167925ENSMUSG00000064293ENSMUST00000079416ENSMUST00000089208ENSMUST00000113258ENSMUST00000113260ENSMUST00000113261ENSMUST00000113264ENSMUST00000123596ENSMUST00000125904ENSMUST00000132044ENSMUST00000132395ENSMUST00000142626
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144619 ENST00000397459 0.280±0.00 0.826±0.00 N/A 1.982±0.00 0.795±0.00 N/A 0.272±0.03 N/A 0.661±0.00 0.502±0.00 0.211±0.00 0.250±0.10 0.614±0.17 10.979±1.78
ENST00000397461 0.362±0.00 0.934±0.00 N/A 0.647±0.04 0.327±0.00 0.419±0.00 0.253±0.00 0.512±0.00 N/A 0.388±0.00 N/A 0.161±0.05 N/A N/A
ENST00000418658 N/A N/A N/A 0.727±0.00 0.462±0.00 0.469±0.00 N/A N/A N/A 0.413±0.00 N/A N/A N/A 0.803±0.00
ENST00000422330 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.467±0.00 N/A N/A N/A N/A
ENST00000427331 N/A N/A N/A 0.861±0.00 N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A 0.188±0.00 N/A
ENST00000427741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430505 N/A N/A 0.538±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.265±0.00 N/A N/A
ENST00000438282 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.419±0.00 N/A N/A N/A N/A
ENST00000455083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473058 N/A N/A N/A N/A N/A N/A 0.673±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000473173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473845 N/A N/A N/A N/A N/A N/A N/A N/A 2.001±0.00 N/A N/A N/A N/A N/A
ENST00000475817 N/A N/A 2.633±0.00 6.115±0.00 3.018±0.00 N/A 0.476±0.00 N/A N/A N/A 1.486±0.00 N/A N/A N/A
ENST00000480113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484686 N/A N/A N/A N/A N/A 0.904±0.00 N/A 0.030±0.00 0.421±0.30 N/A 0.095±0.00 N/A 0.497±0.00 N/A
ENST00000490876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225310 ENST00000440115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.098±0.00
ENSG00000227588 ENST00000447256 N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A 0.403±0.10
ENSG00000230398 ENST00000419438 N/A N/A 0.759±0.00 0.088±0.00 0.758±0.00 0.358±0.00 N/A N/A 0.164±0.00 0.546±0.03 N/A 0.138±0.00 N/A N/A
ENSG00000237990 ENST00000442749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005364 ENSMUST00000167925 0.074±0.06 N/A 0.021±0.01 0.028±0.00 0.172±0.06 0.063±0.01 0.027±0.01 0.170±0.10 0.054±0.02 0.079±0.03 0.073±0.00 0.124±0.06 0.009±0.00 0.147±0.09
ENSMUSG00000064293 ENSMUST00000079416 N/A N/A N/A N/A N/A N/A N/A 0.070±0.02 N/A N/A N/A 0.211±0.00 N/A N/A
ENSMUST00000089208 0.027±0.01 N/A 1.226±0.65 1.589±0.08 N/A 0.047±0.00 0.006±0.00 N/A 0.012±0.01 0.057±0.01 0.005±0.00 0.250±0.12 0.015±0.00 0.021±0.01
ENSMUST00000113258 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.164±0.06 N/A N/A
ENSMUST00000113260 N/A 0.051±0.00 N/A 2.642±0.00 N/A 0.092±0.05 N/A 0.055±0.00 0.008±0.00 N/A N/A 0.412±0.14 0.016±0.00 0.051±0.01
ENSMUST00000113261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A
ENSMUST00000113264 N/A N/A 0.792±0.00 0.902±0.19 N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A N/A 0.089±0.00
ENSMUST00000123596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A
ENSMUST00000125904 N/A N/A N/A N/A N/A 0.134±0.09 N/A N/A 0.008±0.00 N/A N/A 0.525±0.22 N/A N/A
ENSMUST00000130040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132044 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A 0.067±0.00 N/A
ENSMUST00000132395 N/A N/A N/A 4.110±0.00 0.042±0.02 0.039±0.00 0.023±0.01 N/A 0.002±0.00 0.120±0.00 N/A 0.516±0.34 0.011±0.01 0.069±0.05
ENSMUST00000142626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A

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