C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hemicentin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148357 HMCN2 9606 + 9:130265882-130434123 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000428715 HMCN2-004 130425716-130431438 protein_coding
  ENST00000480829 HMCN2-002 130398642-130407252 retained_intron
  ENST00000487727 HMCN2-003 130384449-130419582 nonsense_mediated_decay
  ENST00000611173 HMCN2-201 130307519-130338606 protein_coding
  ENST00000623487 HMCN2-005 130429166-130434121 retained_intron
  ENST00000624552 HMCN2-001 130265882-130434123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000428715ENST00000480829ENST00000487727ENST00000611173ENST00000623487ENST00000624552
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000428715 N/A N/A N/A 0.212±0.00 2.951±0.00 5.498±0.00 N/A 1.135±0.00 0.358±0.00 N/A N/A N/A N/A 12.553±0.00
ENST00000480829 N/A N/A N/A 0.037±0.02 N/A N/A N/A N/A N/A 1.162±0.00 N/A 0.165±0.00 0.063±0.00 N/A
ENST00000487727 0.460±0.00 N/A 0.028±0.00 0.020±0.00 N/A N/A N/A 0.226±0.00 N/A N/A N/A 0.582±0.14 N/A N/A
ENST00000611173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A N/A
ENST00000623487 N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 0.089±0.00 N/A N/A 0.292±0.00 N/A N/A
ENST00000624552 0.544±0.00 1.764±0.00 0.066±0.00 N/A 0.330±0.09 1.403±0.00 0.154±0.00 0.053±0.00 0.035±0.00 N/A 1.024±0.26 0.234±0.17 0.088±0.00 2.909±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XH CIL_0004XH_0001 CGP 9:130172578-130434123
CIL_000936 CIL_000936_0001 VISTA 9:130178260-130779710
CIL_0005UI CIL_0005UI_0001 CGP 9:130265882-130501274

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005604 IEA basement membrane
GO:0005938 IEA cell cortex
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079327 hmcn2 hemicentin 2 protein_coding Danio_rerio
ENSMUSG00000055632 Hmcn2 hemicentin 2 protein_coding Mus_musculus

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