C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hemicentin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055632 Hmcn2 10090 + 2:31314415-31460738 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000113532 Hmcn2-001 31314415-31460738 protein_coding
  ENSMUST00000130375 Hmcn2-002 31400277-31405814 protein_coding
  ENSMUST00000138821 Hmcn2-003 31438062-31460724 retained_intron
  ENSMUST00000141294 Hmcn2-005 31454708-31457989 retained_intron
  ENSMUST00000142448 Hmcn2-004 31446735-31460737 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113532ENSMUST00000138821ENSMUST00000142448
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113532 7.137±3.67 0.383±0.14 2.531±0.00 0.042±0.01 1.251±0.55 11.480±4.54 1.389±0.38 0.152±0.01 N/A 0.653±0.05 0.832±0.54 3.090±1.62 0.095±0.06 0.347±0.13
ENSMUST00000138821 N/A N/A N/A N/A N/A N/A N/A 2.855±0.73 N/A N/A 4.284±0.96 3.711±0.00 1.294±0.36 N/A
ENSMUST00000142448 27.067±18.90 0.594±0.07 16.659±2.30 N/A 10.490±6.82 44.681±11.46 4.385±1.26 1.849±0.29 0.154±0.10 3.384±0.05 3.416±0.00 13.093±3.95 1.880±0.99 0.797±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0002 VISTA 2:31199311-31800827
CIL_0004XH CIL_0004XH_0002 CGP 2:31245823-31460738
CIL_0005UI CIL_0005UI_0002 CGP 2:31314415-31520672

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IDA extracellular region
GO:0005604 IDA basement membrane
GO:0005938 IDA cell cortex
GO:0008150 ND biological_process
GO:0030054 IDA cell junction
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079327 hmcn2 hemicentin 2 protein_coding Danio_rerio
ENSG00000148357 HMCN2 hemicentin 2 protein_coding Homo_sapiens

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