C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005UI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148357-ENSG00000130707 CGP 9606 9:130265882-130501274
GeneTranscriptPositionBiotype
ENSG00000130707 (ASS1)
argininosuccinate synthase 1 		ENST00000352480 (ASS1-002) 130444929-130501274 protein_coding
ENST00000372386 (ASS1-001) 130479856-130501178 processed_transcript
ENST00000372393 (ASS1-003) 130444988-130501255 protein_coding
ENST00000372394 (ASS1-004) 130444962-130501274 protein_coding
ENST00000422569 (ASS1-005) 130444992-130471513 protein_coding
ENST00000443588 (ASS1-010) 130452223-130471514 protein_coding
ENST00000467695 (ASS1-009) 130458518-130479898 retained_intron
ENST00000470849 (ASS1-008) 130476549-130489421 retained_intron
ENST00000492400 (ASS1-007) 130476284-130489429 processed_transcript
ENST00000493984 (ASS1-006) 130466474-130489404 retained_intron
ENSG00000148357 (HMCN2)
hemicentin 2 		ENST00000428715 (HMCN2-004) 130425716-130431438 protein_coding
ENST00000480829 (HMCN2-002) 130398642-130407252 retained_intron
ENST00000487727 (HMCN2-003) 130384449-130419582 nonsense_mediated_decay
ENST00000611173 (HMCN2-201) 130307519-130338606 protein_coding
ENST00000623487 (HMCN2-005) 130429166-130434121 retained_intron
ENST00000624552 (HMCN2-001) 130265882-130434123 protein_coding
ENSG00000264169 (RN7SL665P)
RNA, 7SL, cytoplasmic 665, pseudogene 		ENST00000578793 (RN7SL665P-201) 130400266-130400565 misc_RNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0005UI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055632-ENSMUSG00000076441 CGP 10090 2:31314415-31520672
GeneTranscriptPositionBiotype
ENSMUSG00000055632 (Hmcn2)
hemicentin 2 		ENSMUST00000113532 (Hmcn2-001) 31314415-31460738 protein_coding
ENSMUST00000130375 (Hmcn2-002) 31400277-31405814 protein_coding
ENSMUST00000138821 (Hmcn2-003) 31438062-31460724 retained_intron
ENSMUST00000141294 (Hmcn2-005) 31454708-31457989 retained_intron
ENSMUST00000142448 (Hmcn2-004) 31446735-31460737 processed_transcript
ENSMUSG00000076441 (Ass1)
argininosuccinate synthetase 1 		ENSMUST00000102840 (Ass1-001) 31470207-31520672 protein_coding
ENSMUST00000126474 (Ass1-002) 31497772-31510155 processed_transcript
ENSMUST00000130195 (Ass1-003) 31518490-31520531 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UI_0001ENSG00000130707ENST00000352480ENST00000372386ENST00000372393ENST00000372394ENST00000422569ENST00000443588ENST00000467695ENST00000470849ENST00000492400ENST00000493984ENSG00000148357ENST00000428715ENST00000480829ENST00000487727ENST00000611173ENST00000623487ENST00000624552ENSG00000264169ENST00000578793CIL_0005UI_0002ENSMUSG00000055632ENSMUST00000113532ENSMUST00000130375ENSMUST00000138821ENSMUST00000141294ENSMUST00000142448ENSMUSG00000076441ENSMUST00000102840ENSMUST00000126474ENSMUST00000130195
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UI_0001ENSG00000130707ENST00000352480ENST00000372386ENST00000372393ENST00000372394ENST00000443588ENST00000492400ENSG00000148357ENST00000428715ENST00000480829ENST00000487727ENST00000611173ENST00000623487ENST00000624552ENSG00000264169ENST00000578793CIL_0005UI_0002ENSMUSG00000055632ENSMUST00000113532ENSMUST00000138821ENSMUST00000142448ENSMUSG00000076441ENSMUST00000102840
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130707 ENST00000352480 146.567±0.00 18.213±0.00 52.868±0.00 5.170±0.10 56.876±49.22 21.836±13.92 5.316±4.84 145.830±80.78 141.726±134.27 32.977±30.18 12.966±11.13 46.329±16.19 38.117±10.27 35.433±25.54
ENST00000372386 82.776±0.00 14.534±0.00 N/A 17.624±0.00 48.035±0.00 40.843±0.00 N/A 165.350±0.00 186.036±0.00 20.497±0.00 N/A 30.052±10.61 N/A 52.486±0.00
ENST00000372393 N/A 14.381±0.00 N/A 10.633±0.00 38.403±0.00 10.372±0.00 4.883±0.00 80.646±0.00 N/A N/A N/A 23.384±6.40 17.804±2.07 13.816±7.53
ENST00000372394 N/A N/A N/A N/A N/A 0.978±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.490±0.00 N/A N/A N/A
ENST00000467695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492400 N/A N/A N/A 5.936±0.00 N/A N/A 0.867±0.00 N/A N/A 2.759±0.00 N/A N/A N/A N/A
ENST00000493984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148357 ENST00000428715 N/A N/A N/A 0.212±0.00 2.951±0.00 5.498±0.00 N/A 1.135±0.00 0.358±0.00 N/A N/A N/A N/A 12.553±0.00
ENST00000480829 N/A N/A N/A 0.037±0.02 N/A N/A N/A N/A N/A 1.162±0.00 N/A 0.165±0.00 0.063±0.00 N/A
ENST00000487727 0.460±0.00 N/A 0.028±0.00 0.020±0.00 N/A N/A N/A 0.226±0.00 N/A N/A N/A 0.582±0.14 N/A N/A
ENST00000611173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A N/A
ENST00000623487 N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 0.089±0.00 N/A N/A 0.292±0.00 N/A N/A
ENST00000624552 0.544±0.00 1.764±0.00 0.066±0.00 N/A 0.330±0.09 1.403±0.00 0.154±0.00 0.053±0.00 0.035±0.00 N/A 1.024±0.26 0.234±0.17 0.088±0.00 2.909±0.00
ENSG00000264169 ENST00000578793 0.129±0.00 N/A N/A 0.229±0.00 0.435±0.00 0.260±0.00 N/A N/A N/A 0.137±0.00 0.062±0.00 N/A N/A 0.126±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000055632 ENSMUST00000113532 7.137±3.67 0.383±0.14 2.531±0.00 0.042±0.01 1.251±0.55 11.480±4.54 1.389±0.38 0.152±0.01 N/A 0.653±0.05 0.832±0.54 3.090±1.62 0.095±0.06 0.347±0.13
ENSMUST00000130375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138821 N/A N/A N/A N/A N/A N/A N/A 2.855±0.73 N/A N/A 4.284±0.96 3.711±0.00 1.294±0.36 N/A
ENSMUST00000141294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142448 27.067±18.90 0.594±0.07 16.659±2.30 N/A 10.490±6.82 44.681±11.46 4.385±1.26 1.849±0.29 0.154±0.10 3.384±0.05 3.416±0.00 13.093±3.95 1.880±0.99 0.797±0.08
ENSMUSG00000076441 ENSMUST00000102840 2.562±0.48 1.995±0.29 15.218±0.43 8.383±9.14 7.668±2.44 16.042±1.16 2.016±0.19 1012.391±60.53 916.296±774.85 7.433±0.66 0.801±0.19 13.775±2.59 153.113±38.89 17.198±1.67
ENSMUST00000126474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading