C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hemicentin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000624552 HMCN2-001 ENSG00000148357 9606 + 9:130265882-130434123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000624552
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000624552 0.544±0.00 1.764±0.00 0.066±0.00 0.330±0.09 1.403±0.00 0.154±0.00 0.053±0.00 0.035±0.00 1.024±0.26 0.234±0.17 0.088±0.00 2.909±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XH CIL_0004XH_0001 CGP 9:130172578-130434123
CIL_000936 CIL_000936_0001 VISTA 9:130178260-130779710
CIL_0005UI CIL_0005UI_0001 CGP 9:130265882-130501274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005604 IEA basement membrane
GO:0005938 IEA cell cortex
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113532 Hmcn2-001 protein_coding Mus_musculus 0 4610
ENSMUST00000138821 Hmcn2-003 retained_intron Mus_musculus 0 1982
ENSMUST00000142448 Hmcn2-004 processed_transcript Mus_musculus 0 1748
ENSMUST00000130375 Hmcn2-002 protein_coding Mus_musculus 0 222

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