C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle transport through interaction with t-SNAREs 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000432306 VTI1A-009 ENSG00000151532 9606 + 10:112447258-112737784 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLungOvaryENST00000432306
Transcript ID Bladder Heart Lung Ovary
ENST00000432306 2.247±0.00 1.254±0.00 1.868±0.00 2.001±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093P CIL_00093P_0001 VISTA 10:112343926-112944807
CIL_0006OV CIL_0006OV_0001 CGP 10:112430300-112818744
CIL_0006OU CIL_0006OU_0001 CGP 10:112446998-113167678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006886 IEA intracellular protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095950 Vti1a-201 protein_coding Mus_musculus 0 741
ENSDART00000154255 vti1a-201 protein_coding Danio_rerio 0 294
ENSDART00000066256 vti1a-001 protein_coding Danio_rerio 0 294
ENSDART00000153172 vti1a-003 protein_coding Danio_rerio 0 272

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