C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle transport through interaction with t-SNAREs 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393077 VTI1A-001 ENSG00000151532 9606 + 10:112447258-112818744 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393077
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393077 3.813±0.00 2.757±0.00 1.484±0.00 2.410±0.07 3.806±0.36 2.557±0.60 1.818±0.49 3.015±1.59 2.271±0.94 2.333±0.13 1.582±0.62 2.424±1.00 2.332±0.17 2.949±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093P CIL_00093P_0001 VISTA 10:112343926-112944807
CIL_0006OV CIL_0006OV_0001 CGP 10:112430300-112818744
CIL_0006OU CIL_0006OU_0001 CGP 10:112446998-113167678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IDA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005768 ISS endosome
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 ISS ER to Golgi vesicle-mediated transport
GO:0008021 ISS synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030136 ISS clathrin-coated vesicle
GO:0031201 ISS SNARE complex
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0043025 ISS neuronal cell body
GO:0044306 ISS neuron projection terminus
GO:0048280 ISS vesicle fusion with Golgi apparatus
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095950 Vti1a-201 protein_coding Mus_musculus 0 1098
ENSDART00000066256 vti1a-001 protein_coding Danio_rerio 0 329
ENSDART00000154255 vti1a-201 protein_coding Danio_rerio 0 294
ENSDART00000153172 vti1a-003 protein_coding Danio_rerio 0 272

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