C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif, single stranded interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153250 RBMS1 9606 - 2:160272151-160493794 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348849 RBMS1-001 160272151-160493794 protein_coding
  ENST00000392753 RBMS1-201 160272152-160367526 protein_coding
  ENST00000409075 RBMS1-006 160274460-160408609 protein_coding
  ENST00000409289 RBMS1-009 160274460-160416178 protein_coding
  ENST00000409972 RBMS1-007 160274520-160407889 protein_coding
  ENST00000428519 RBMS1-015 160303408-160416178 protein_coding
  ENST00000464200 RBMS1-011 160275399-160277372 retained_intron
  ENST00000474147 RBMS1-003 160274460-160279766 retained_intron
  ENST00000474820 RBMS1-002 160272151-160493379 processed_transcript
  ENST00000475103 RBMS1-010 160274480-160276685 processed_transcript
  ENST00000477486 RBMS1-014 160366913-160492969 retained_intron
  ENST00000477965 RBMS1-004 160274540-160283100 retained_intron
  ENST00000490637 RBMS1-008 160274518-160284867 retained_intron
  ENST00000491781 RBMS1-005 160284261-160493482 retained_intron
  ENST00000492283 RBMS1-012 160302504-160318203 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348849ENST00000392753ENST00000409289ENST00000409972ENST00000474147ENST00000474820ENST00000490637
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348849 8.518±0.00 3.834±0.00 N/A 0.414±0.00 4.629±0.00 2.616±0.00 2.669±1.56 2.379±0.00 2.093±0.00 10.760±0.00 1.252±1.11 3.120±0.49 10.185±0.00 3.124±0.00
ENST00000392753 N/A 4.060±0.00 1.068±0.00 0.645±0.00 3.355±0.00 N/A 1.902±1.18 2.992±0.00 2.170±1.55 5.815±0.00 1.442±0.00 4.620±0.55 16.665±10.30 3.238±0.00
ENST00000409289 N/A N/A N/A N/A N/A N/A 2.536±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000409972 N/A N/A 1.870±0.00 1.297±0.00 3.949±0.00 N/A N/A N/A 5.280±0.00 N/A 0.879±0.00 6.485±0.41 43.338±0.00 4.929±0.00
ENST00000474147 N/A N/A N/A N/A N/A N/A 1.364±0.00 1.155±0.00 N/A 3.763±0.00 N/A N/A N/A N/A
ENST00000474820 N/A N/A N/A N/A N/A 1.899±0.00 N/A 2.220±0.00 N/A N/A N/A N/A N/A N/A
ENST00000490637 N/A N/A N/A N/A N/A N/A 0.973±0.00 N/A N/A 4.140±0.00 0.220±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TW CIL_0005TW_0001 CGP 2:160099666-160493794
CIL_0005KZ CIL_0005KZ_0001 CGP 2:160272151-161236221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003690 NAS double-stranded DNA binding
GO:0003697 NAS single-stranded DNA binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0006260 NAS DNA replication
GO:0006396 TAS RNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057768 RBMS1 RNA binding motif, single stranded interacting protein 1 protein_coding Danio_rerio
ENSMUSG00000026970 Rbms1 RNA binding motif, single stranded interacting protein 1 protein_coding Mus_musculus

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