C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif, single stranded interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348849 RBMS1-001 ENSG00000153250 9606 - 2:160272151-160493794 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348849
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348849 8.518±0.00 3.834±0.00 0.414±0.00 4.629±0.00 2.616±0.00 2.669±1.56 2.379±0.00 2.093±0.00 10.760±0.00 1.252±1.11 3.120±0.49 10.185±0.00 3.124±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TW CIL_0005TW_0001 CGP 2:160099666-160493794
CIL_0005KZ CIL_0005KZ_0001 CGP 2:160272151-161236221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003690 NAS double-stranded DNA binding
GO:0003697 NAS single-stranded DNA binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0006260 NAS DNA replication
GO:0006396 TAS RNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028347 Rbms1-001 protein_coding Mus_musculus 0 3624
ENSMUST00000164147 Rbms1-201 protein_coding Mus_musculus 0 1816
ENSMUST00000112509 Rbms1-002 protein_coding Mus_musculus 0 1072
ENSMUST00000123046 Rbms1-004 processed_transcript Mus_musculus 0 651
ENSMUST00000153555 Rbms1-003 processed_transcript Mus_musculus 0 440
ENSMUST00000132529 Rbms1-007 processed_transcript Mus_musculus 0 254
ENSMUST00000151846 Rbms1-009 processed_transcript Mus_musculus 0 250

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