C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif, single stranded interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392753 RBMS1-201 ENSG00000153250 9606 - 2:160272152-160367526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392753
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392753 4.060±0.00 1.068±0.00 0.645±0.00 3.355±0.00 1.902±1.18 2.992±0.00 2.170±1.55 5.815±0.00 1.442±0.00 4.620±0.55 16.665±10.30 3.238±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TW CIL_0005TW_0001 CGP 2:160099666-160493794
CIL_0005KZ CIL_0005KZ_0001 CGP 2:160272151-161236221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028347 Rbms1-001 protein_coding Mus_musculus 0 3014
ENSMUST00000164147 Rbms1-201 protein_coding Mus_musculus 0 1816
ENSMUST00000112509 Rbms1-002 protein_coding Mus_musculus 0 1066
ENSMUST00000123046 Rbms1-004 processed_transcript Mus_musculus 0 651
ENSMUST00000153555 Rbms1-003 processed_transcript Mus_musculus 0 440
ENSMUST00000151846 Rbms1-009 processed_transcript Mus_musculus 0 248
ENSMUST00000132529 Rbms1-007 processed_transcript Mus_musculus 0 248

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