C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif, single stranded interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026970 Rbms1 10090 - 2:60750193-60963192 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028347 Rbms1-001 60750193-60963192 protein_coding
  ENSMUST00000112509 Rbms1-002 60752722-60881470 protein_coding
  ENSMUST00000123046 Rbms1-004 60753560-60762321 processed_transcript
  ENSMUST00000125485 Rbms1-008 60888212-60888508 processed_transcript
  ENSMUST00000128866 Rbms1-006 60888424-60888996 processed_transcript
  ENSMUST00000132529 Rbms1-007 60842297-60889030 processed_transcript
  ENSMUST00000151846 Rbms1-009 60842297-60888055 processed_transcript
  ENSMUST00000153555 Rbms1-003 60755416-60780941 processed_transcript
  ENSMUST00000164147 Rbms1-201 60751953-60881438 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028347ENSMUST00000112509ENSMUST00000123046ENSMUST00000153555ENSMUST00000164147
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028347 12.009±2.89 6.783±0.90 12.030±0.37 5.945±3.90 9.187±0.83 4.743±0.66 7.700±1.09 7.639±1.68 4.536±0.67 20.475±1.76 1.785±0.62 8.560±3.75 18.294±1.96 8.118±0.00
ENSMUST00000112509 17.714±2.76 12.799±0.00 N/A 5.354±0.00 14.205±4.97 9.846±3.83 6.399±1.36 5.164±1.47 3.571±0.51 30.313±11.20 2.425±0.00 20.232±11.15 10.945±0.00 N/A
ENSMUST00000123046 28.786±1.83 21.759±0.00 N/A N/A 46.385±6.83 15.614±3.36 12.396±3.55 15.367±3.46 14.471±3.14 56.587±5.50 N/A 39.050±5.65 N/A 53.278±15.05
ENSMUST00000153555 N/A N/A N/A N/A 18.248±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 24.292±8.84
ENSMUST00000164147 N/A 14.316±1.00 N/A 2.167±0.00 11.657±3.27 3.392±0.00 1.992±0.00 4.209±0.58 2.276±0.13 15.344±1.66 N/A 16.313±6.86 9.113±1.21 3.654±2.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TW CIL_0005TW_0002 CGP 2:60598292-60963192
CIL_0005KZ CIL_0005KZ_0002 CGP 2:60750193-61654171

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057768 RBMS1 RNA binding motif, single stranded interacting protein 1 protein_coding Danio_rerio
ENSG00000153250 RBMS1 RNA binding motif, single stranded interacting protein 1 protein_coding Homo_sapiens

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