C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MMS19 nucleotide excision repair homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155229 MMS19 9606 - 10:97458324-97498794 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327238 MMS19-018 97458326-97498384 protein_coding
  ENST00000355839 MMS19-201 97458326-97498609 protein_coding
  ENST00000370782 MMS19-006 97458324-97498758 protein_coding
  ENST00000415383 MMS19-007 97458324-97498388 nonsense_mediated_decay
  ENST00000422685 MMS19-010 97470831-97498429 protein_coding
  ENST00000434392 MMS19-014 97465865-97470140 nonsense_mediated_decay
  ENST00000434538 MMS19-020 97458324-97467525 protein_coding
  ENST00000437002 MMS19-012 97469095-97498410 protein_coding
  ENST00000438925 MMS19-005 97458324-97498720 protein_coding
  ENST00000439048 MMS19-004 97476729-97498399 nonsense_mediated_decay
  ENST00000441194 MMS19-009 97469653-97498432 nonsense_mediated_decay
  ENST00000444411 MMS19-017 97458324-97459741 protein_coding
  ENST00000448660 MMS19-013 97476683-97498429 nonsense_mediated_decay
  ENST00000477575 MMS19-003 97476917-97498447 retained_intron
  ENST00000478452 MMS19-015 97461589-97463006 retained_intron
  ENST00000480108 MMS19-016 97460073-97461366 retained_intron
  ENST00000483626 MMS19-008 97469673-97498794 processed_transcript
  ENST00000485400 MMS19-002 97458326-97460319 retained_intron
  ENST00000495415 MMS19-021 97458324-97463982 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327238ENST00000355839ENST00000370782ENST00000415383ENST00000422685ENST00000434538ENST00000437002ENST00000438925ENST00000439048ENST00000441194ENST00000448660ENST00000477575ENST00000485400ENST00000495415
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327238 N/A N/A N/A 1.241±0.00 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000355839 N/A N/A N/A 1.992±0.00 N/A N/A N/A N/A N/A 1.517±0.00 N/A 5.752±5.46 2.884±0.00 14.315±11.07
ENST00000370782 4.432±0.00 2.292±0.00 N/A N/A 1.534±0.00 1.329±0.72 1.703±0.00 2.661±0.00 2.055±0.00 3.808±0.00 8.136±0.00 8.683±1.99 9.781±0.19 3.994±0.00
ENST00000415383 2.389±0.00 2.966±0.00 N/A 1.511±0.55 4.081±0.00 2.544±0.00 3.042±0.00 2.257±0.00 N/A 4.947±0.00 6.800±0.00 4.313±0.00 3.245±0.00 5.837±0.00
ENST00000422685 N/A N/A N/A N/A N/A N/A N/A 2.427±0.00 N/A N/A N/A N/A N/A N/A
ENST00000434538 N/A 4.048±0.00 N/A 3.338±0.00 3.036±0.00 3.548±0.00 2.476±0.00 3.405±2.72 3.046±0.00 4.884±0.00 N/A 9.300±0.00 N/A 5.608±0.00
ENST00000437002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.015±0.00 N/A N/A
ENST00000438925 N/A N/A N/A N/A N/A N/A N/A 1.995±0.00 N/A N/A N/A N/A N/A N/A
ENST00000439048 N/A N/A N/A N/A 6.714±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441194 N/A N/A N/A 3.741±0.00 N/A 2.473±0.00 1.486±0.00 N/A 4.412±0.00 N/A 2.663±0.00 5.789±0.00 N/A N/A
ENST00000448660 N/A N/A N/A N/A N/A N/A N/A 2.165±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477575 N/A N/A 2.877±0.00 N/A 3.200±0.00 N/A 0.987±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000485400 N/A N/A N/A 2.114±0.00 N/A N/A 1.189±0.00 N/A N/A N/A N/A 3.369±0.00 N/A N/A
ENST00000495415 N/A N/A N/A N/A N/A 2.220±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y1 CIL_0005Y1_0001 CGP 10:97446131-97498794
CIL_0004VE CIL_0004VE_0001 CGP 10:97458324-97571209

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000160 NAS phosphorelay signal transduction system
GO:0003713 IMP transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005675 NAS holo TFIIH complex
GO:0005737 IDA cytoplasm
GO:0005819 IDA spindle
GO:0006259 IMP DNA metabolic process
GO:0006281 IMP DNA repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 NAS transcription, DNA-templated
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007059 IMP chromosome segregation
GO:0009725 NAS response to hormone
GO:0016020 IDA membrane
GO:0016226 IMP iron-sulfur cluster assembly
GO:0030159 NAS receptor signaling complex scaffold activity
GO:0030331 IPI estrogen receptor binding
GO:0030674 NAS protein binding, bridging
GO:0044281 TAS small molecule metabolic process
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0071817 IDA MMXD complex
GO:0097361 IDA CIA complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079067 mms19 MMS19 nucleotide excision repair homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000025159 Mms19 MMS19 (MET18 S. cerevisiae) protein_coding Mus_musculus

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