C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MMS19 nucleotide excision repair homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415383 MMS19-007 ENSG00000155229 9606 - 10:97458324-97498388 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000415383
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000415383 2.389±0.00 2.966±0.00 1.511±0.55 4.081±0.00 2.544±0.00 3.042±0.00 2.257±0.00 4.947±0.00 6.800±0.00 4.313±0.00 3.245±0.00 5.837±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y1 CIL_0005Y1_0001 CGP 10:97446131-97498794
CIL_0004VE CIL_0004VE_0001 CGP 10:97458324-97571209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000160 NAS phosphorelay signal transduction system
GO:0003713 IMP transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005675 NAS holo TFIIH complex
GO:0005737 IDA cytoplasm
GO:0005819 IDA spindle
GO:0006259 IMP DNA metabolic process
GO:0006281 IMP DNA repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 NAS transcription, DNA-templated
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007059 IMP chromosome segregation
GO:0009725 NAS response to hormone
GO:0016020 IDA membrane
GO:0016226 IMP iron-sulfur cluster assembly
GO:0030159 NAS receptor signaling complex scaffold activity
GO:0030331 IPI estrogen receptor binding
GO:0030674 NAS protein binding, bridging
GO:0044281 TAS small molecule metabolic process
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0071817 IDA MMXD complex
GO:0097361 IDA CIA complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163398 Mms19-010 nonsense_mediated_decay Mus_musculus 0 3498
ENSMUST00000164776 Mms19-004 nonsense_mediated_decay Mus_musculus 0 3434
ENSMUST00000171561 Mms19-001 protein_coding Mus_musculus 0 3319
ENSMUST00000170209 Mms19-007 retained_intron Mus_musculus 0 3118
ENSMUST00000026168 Mms19-009 protein_coding Mus_musculus 0 2850
ENSMUST00000171755 Mms19-002 retained_intron Mus_musculus 0 2817
ENSMUST00000167927 Mms19-006 nonsense_mediated_decay Mus_musculus 0 2204
ENSMUST00000163287 Mms19-011 protein_coding Mus_musculus 0 2145
ENSMUST00000169775 Mms19-003 nonsense_mediated_decay Mus_musculus 0 2047
ENSMUST00000166090 Mms19-012 nonsense_mediated_decay Mus_musculus 0 1932
ENSMUST00000168484 Mms19-005 nonsense_mediated_decay Mus_musculus 0 1712
ENSMUST00000167820 Mms19-015 protein_coding Mus_musculus 0 752
ENSMUST00000169933 Mms19-013 retained_intron Mus_musculus 0 257
ENSMUST00000169765 Mms19-008 protein_coding Mus_musculus 0 219

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