C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MMS19 (MET18 S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025159 Mms19 10090 - 19:41941086-41981157 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026168 Mms19-009 41944377-41981132 protein_coding
  ENSMUST00000163287 Mms19-011 41944209-41969722 protein_coding
  ENSMUST00000163398 Mms19-010 41944211-41981117 nonsense_mediated_decay
  ENSMUST00000164776 Mms19-004 41944211-41981136 nonsense_mediated_decay
  ENSMUST00000165043 Mms19-017 41947165-41948232 retained_intron
  ENSMUST00000166090 Mms19-012 41944489-41955138 nonsense_mediated_decay
  ENSMUST00000166517 Mms19-016 41949727-41951344 retained_intron
  ENSMUST00000167820 Mms19-015 41946980-41953944 protein_coding
  ENSMUST00000167927 Mms19-006 41941086-41981114 nonsense_mediated_decay
  ENSMUST00000168484 Mms19-005 41953097-41981130 nonsense_mediated_decay
  ENSMUST00000168737 Mms19-014 41954457-41955167 retained_intron
  ENSMUST00000169765 Mms19-008 41962988-41969741 protein_coding
  ENSMUST00000169775 Mms19-003 41947675-41981137 nonsense_mediated_decay
  ENSMUST00000169779 Mms19-018 41944549-41945627 retained_intron
  ENSMUST00000169933 Mms19-013 41962780-41963107 retained_intron
  ENSMUST00000170209 Mms19-007 41944205-41964627 retained_intron
  ENSMUST00000171561 Mms19-001 41941086-41981157 protein_coding
  ENSMUST00000171755 Mms19-002 41946792-41981139 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026168ENSMUST00000163287ENSMUST00000163398ENSMUST00000164776ENSMUST00000166090ENSMUST00000167927ENSMUST00000170209ENSMUST00000171561ENSMUST00000171755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026168 7.221±1.47 8.258±0.58 N/A N/A 11.386±2.05 7.731±0.42 4.167±0.89 7.898±2.30 4.993±0.98 10.841±2.15 N/A 14.120±3.53 5.386±0.86 5.772±1.48
ENSMUST00000163287 N/A N/A 4.443±0.00 2.080±0.00 8.952±0.00 N/A N/A 4.273±0.00 N/A N/A 1.600±0.00 6.378±0.00 3.297±0.00 0.964±0.00
ENSMUST00000163398 6.598±1.55 5.707±1.05 6.373±0.91 4.962±2.32 7.107±0.05 3.803±0.00 3.554±0.75 4.990±0.53 4.436±1.15 6.831±1.11 2.331±0.40 5.080±0.84 6.527±1.57 3.930±1.77
ENSMUST00000164776 N/A N/A 7.932±0.00 8.857±1.06 N/A N/A 2.153±0.00 N/A 5.166±0.97 N/A 2.152±0.61 N/A 5.421±0.72 3.574±0.12
ENSMUST00000166090 N/A 8.887±1.67 N/A N/A N/A 7.599±0.48 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167927 3.326±1.32 3.475±0.65 4.241±1.99 5.271±0.10 4.598±0.61 2.880±0.32 1.391±0.32 2.961±0.26 2.419±0.82 3.947±0.17 0.860±0.13 4.181±1.16 3.754±1.07 1.830±0.87
ENSMUST00000170209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.263±0.00 N/A N/A
ENSMUST00000171561 N/A N/A N/A 1.086±0.00 N/A N/A N/A N/A N/A N/A 1.007±0.17 1.147±0.00 2.498±0.74 0.320±0.00
ENSMUST00000171755 N/A 7.142±1.51 N/A N/A 6.404±0.00 5.267±0.00 N/A N/A N/A N/A N/A 9.496±1.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y0 CIL_0005Y0_0002 CGP 19:41922980-41944095
CIL_0005Y1 CIL_0005Y1_0002 CGP 19:41933472-41981157
CIL_0004VE CIL_0004VE_0002 CGP 19:41941086-42034641

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003713 IEA transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005819 ISS spindle
GO:0006259 ISS DNA metabolic process
GO:0006281 ISS DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007059 ISS chromosome segregation
GO:0016020 IEA membrane
GO:0016226 ISS iron-sulfur cluster assembly
GO:0030331 IEA estrogen receptor binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0071817 ISS MMXD complex
GO:0097361 ISS CIA complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079067 mms19 MMS19 nucleotide excision repair homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000155229 MMS19 MMS19 nucleotide excision repair homolog (S. cerevisiae) protein_coding Homo_sapiens

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