C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: MMS19 nucleotide excision repair homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439048 MMS19-004 ENSG00000155229 9606 - 10:97476729-97498399 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000439048
Transcript ID Breast
ENST00000439048 6.714±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y1 CIL_0005Y1_0001 CGP 10:97446131-97498794
CIL_0004VE CIL_0004VE_0001 CGP 10:97458324-97571209

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169775 Mms19-003 nonsense_mediated_decay Mus_musculus 0 667
ENSMUST00000026168 Mms19-009 protein_coding Mus_musculus 0 538
ENSMUST00000168484 Mms19-005 nonsense_mediated_decay Mus_musculus 0 536
ENSMUST00000171755 Mms19-002 retained_intron Mus_musculus 0 536
ENSMUST00000171561 Mms19-001 protein_coding Mus_musculus 0 536
ENSMUST00000167927 Mms19-006 nonsense_mediated_decay Mus_musculus 0 531
ENSMUST00000163287 Mms19-011 protein_coding Mus_musculus 0 390
ENSMUST00000164776 Mms19-004 nonsense_mediated_decay Mus_musculus 0 366
ENSMUST00000163398 Mms19-010 nonsense_mediated_decay Mus_musculus 0 309
ENSMUST00000169765 Mms19-008 protein_coding Mus_musculus 0 267
ENSMUST00000169933 Mms19-013 retained_intron Mus_musculus 4e-30 135
ENSMUST00000170209 Mms19-007 retained_intron Mus_musculus 4e-30 135

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