C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00026M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157869-ENSG00000109705 CGP 9606 4:13361354-13545050
GeneTranscriptPositionBiotype
ENSG00000109705 (NKX3-2)
NK3 homeobox 2 		ENST00000382438 (NKX3-2-001) 13540830-13545050 protein_coding
ENSG00000157869 (RAB28)
RAB28, member RAS oncogene family 		ENST00000288723 (RAB28-002) 13367724-13484365 protein_coding
ENST00000330852 (RAB28-001) 13367724-13484365 protein_coding
ENST00000338176 (RAB28-201) 13367725-13484365 protein_coding
ENST00000504644 (RAB28-008) 13368501-13381594 protein_coding
ENST00000508274 (RAB28-003) 13367724-13484331 nonsense_mediated_decay
ENST00000510528 (RAB28-005) 13459863-13474322 protein_coding
ENST00000511649 (RAB28-006) 13361354-13474345 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00026M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029128-ENSMUSG00000049691 CGP 10090 5:41624976-41764501
GeneTranscriptPositionBiotype
ENSMUSG00000029128 (Rab28)
RAB28, member RAS oncogene family 		ENSMUST00000031011 (Rab28-201) 41624976-41708155 protein_coding
ENSMUSG00000049691 (Nkx3-2)
NK3 homeobox 2 		ENSMUST00000060820 (Nkx3-2-001) 41761483-41764501 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00026M_0001ENSG00000109705ENST00000382438ENSG00000157869ENST00000288723ENST00000330852ENST00000338176ENST00000504644ENST00000508274ENST00000510528ENST00000511649CIL_00026M_0002ENSMUSG00000029128ENSMUST00000031011ENSMUSG00000049691ENSMUST00000060820
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00026M_0001ENSG00000109705ENST00000382438ENSG00000157869ENST00000288723ENST00000330852ENST00000508274ENST00000511649CIL_00026M_0002ENSMUSG00000029128ENSMUST00000031011ENSMUSG00000049691ENSMUST00000060820
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109705 ENST00000382438 N/A 0.574±0.00 N/A 0.027±0.00 0.094±0.04 4.531±3.72 0.022±0.00 0.036±0.00 0.110±0.00 0.011±0.00 0.010±0.00 0.193±0.09 N/A 0.242±0.04
ENSG00000157869 ENST00000288723 1.595±0.00 N/A N/A 1.366±0.00 1.327±0.00 1.243±0.00 1.697±0.00 3.405±0.00 N/A 2.202±0.00 2.031±0.00 2.166±1.33 2.436±1.27 16.882±5.83
ENST00000330852 3.805±0.00 2.989±0.00 0.447±0.00 2.739±2.37 4.270±0.00 2.499±1.91 4.240±0.00 3.016±0.00 0.980±0.06 4.258±0.00 N/A 4.658±3.20 3.586±0.66 6.108±0.00
ENST00000338176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508274 N/A 1.800±0.00 N/A 1.239±0.00 N/A N/A 0.845±0.00 N/A 0.932±0.00 1.221±0.00 N/A 1.048±0.09 1.298±0.26 N/A
ENST00000510528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511649 N/A N/A N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A 1.192±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029128 ENSMUST00000031011 14.510±4.95 67.852±33.67 21.846±2.30 15.607±6.15 17.738±6.57 26.928±3.34 4.998±1.30 16.404±2.90 8.243±1.56 29.733±4.82 5.998±0.78 19.674±6.98 7.178±2.57 21.178±6.20
ENSMUSG00000049691 ENSMUST00000060820 0.111±0.06 0.039±0.02 0.010±0.00 0.012±0.00 0.059±0.04 3.086±1.30 0.028±0.01 N/A 0.019±0.01 0.015±0.00 N/A 0.049±0.02 0.067±0.03 0.019±0.00

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