C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00097J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs916 VISTA 9606 4:13215873-13817543
GeneTranscriptPositionBiotype
ENSG00000038219 (BOD1L1)
biorientation of chromosomes in cell division 1-like 1 		ENST00000040738 (BOD1L1-001) 13568738-13627723 protein_coding
ENST00000482713 (BOD1L1-002) 13613506-13627701 nonsense_mediated_decay
ENST00000505343 (BOD1L1-006) 13569786-13578201 retained_intron
ENST00000507943 (BOD1L1-004) 13569506-13581048 protein_coding
ENST00000509897 (BOD1L1-005) 13577581-13580066 retained_intron
ENST00000511119 (BOD1L1-003) 13582230-13593520 retained_intron
ENSG00000109705 (NKX3-2)
NK3 homeobox 2 		ENST00000382438 (NKX3-2-001) 13540830-13545050 protein_coding
ENSG00000157869 (RAB28)
RAB28, member RAS oncogene family 		ENST00000288723 (RAB28-002) 13367724-13484365 protein_coding
ENST00000330852 (RAB28-001) 13367724-13484365 protein_coding
ENST00000338176 (RAB28-201) 13367725-13484365 protein_coding
ENST00000504644 (RAB28-008) 13368501-13381594 protein_coding
ENST00000508274 (RAB28-003) 13367724-13484331 nonsense_mediated_decay
ENST00000510528 (RAB28-005) 13459863-13474322 protein_coding
ENST00000511649 (RAB28-006) 13361354-13474345 protein_coding
ENSG00000205940 (HSP90AB2P)
heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene 		ENST00000507090 (HSP90AB2P-002) 13336482-13338657 transcribed_processed_pseudogene
ENST00000602906 (HSP90AB2P-001) 13333414-13338302 processed_transcript
ENSG00000242209 (AC006445.6)
 ENST00000491925 (AC006445.6-001) 13647697-13648400 processed_pseudogene
ENSG00000246095 (LINC01096)
long intergenic non-protein coding RNA 1096 		ENST00000501050 (LINC01096-001) 13546076-13547801 lincRNA
ENST00000503938 (LINC01096-002) 13546075-13546964 lincRNA
ENSG00000249148 (AC006445.7)
 ENST00000510061 (AC006445.7-001) 13631820-13632599 processed_pseudogene
ENSG00000250497 (AC007126.1)
 ENST00000508202 (AC007126.1-001) 13777377-13782157 lincRNA
ENSG00000250634 (LINC01182)
long intergenic non-protein coding RNA 1182 		ENST00000503532 (LINC01182-001) 13820110-13977075 lincRNA
ENST00000510907 (LINC01182-002) 13655179-13931228 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00097J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs916 VISTA 10090 5:41437620-42039298
GeneTranscriptPositionBiotype
ENSMUSG00000029128 (Rab28)
RAB28, member RAS oncogene family 		ENSMUST00000031011 (Rab28-201) 41624976-41708155 protein_coding
ENSMUSG00000049691 (Nkx3-2)
NK3 homeobox 2 		ENSMUST00000060820 (Nkx3-2-001) 41761483-41764501 protein_coding
ENSMUSG00000061755 (Bod1l)
biorientation of chromosomes in cell division 1-like 		ENSMUST00000050556 (Bod1l-201) 41787542-41844168 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00097J_0001ENSG00000038219ENST00000040738ENST00000482713ENST00000505343ENST00000507943ENST00000509897ENST00000511119ENSG00000109705ENST00000382438ENSG00000157869ENST00000288723ENST00000330852ENST00000338176ENST00000504644ENST00000508274ENST00000510528ENST00000511649ENSG00000205940ENST00000507090ENST00000602906ENSG00000242209ENST00000491925ENSG00000246095ENST00000501050ENST00000503938ENSG00000249148ENST00000510061ENSG00000250497ENST00000508202ENSG00000250634ENST00000503532ENST00000510907CIL_00097J_0002ENSMUSG00000029128ENSMUST00000031011ENSMUSG00000049691ENSMUST00000060820ENSMUSG00000061755ENSMUST00000050556
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00097J_0001ENSG00000038219ENST00000040738ENST00000507943ENST00000511119ENSG00000109705ENST00000382438ENSG00000157869ENST00000288723ENST00000330852ENST00000508274ENST00000511649ENSG00000205940ENST00000507090ENST00000602906ENSG00000242209ENST00000491925ENSG00000246095ENST00000501050ENST00000503938ENSG00000249148ENST00000510061ENSG00000250497ENST00000508202ENSG00000250634ENST00000503532ENST00000510907CIL_00097J_0002ENSMUSG00000029128ENSMUST00000031011ENSMUSG00000049691ENSMUST00000060820ENSMUSG00000061755ENSMUST00000050556
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000038219 ENST00000040738 4.866±0.00 3.155±0.00 N/A 3.186±1.44 2.705±0.54 3.052±1.06 1.924±1.07 2.433±0.89 1.831±0.98 1.592±0.10 0.815±0.43 3.974±2.15 4.905±5.27 5.523±0.00
ENST00000482713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507943 N/A N/A N/A N/A N/A N/A N/A 5.108±0.00 N/A N/A N/A 4.782±0.00 2.156±0.32 N/A
ENST00000509897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511119 N/A N/A N/A N/A N/A 3.643±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000109705 ENST00000382438 N/A 0.574±0.00 N/A 0.027±0.00 0.094±0.04 4.531±3.72 0.022±0.00 0.036±0.00 0.110±0.00 0.011±0.00 0.010±0.00 0.193±0.09 N/A 0.242±0.04
ENSG00000157869 ENST00000288723 1.595±0.00 N/A N/A 1.366±0.00 1.327±0.00 1.243±0.00 1.697±0.00 3.405±0.00 N/A 2.202±0.00 2.031±0.00 2.166±1.33 2.436±1.27 16.882±5.83
ENST00000330852 3.805±0.00 2.989±0.00 0.447±0.00 2.739±2.37 4.270±0.00 2.499±1.91 4.240±0.00 3.016±0.00 0.980±0.06 4.258±0.00 N/A 4.658±3.20 3.586±0.66 6.108±0.00
ENST00000338176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508274 N/A 1.800±0.00 N/A 1.239±0.00 N/A N/A 0.845±0.00 N/A 0.932±0.00 1.221±0.00 N/A 1.048±0.09 1.298±0.26 N/A
ENST00000510528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511649 N/A N/A N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A 1.192±0.00 N/A N/A
ENSG00000205940 ENST00000507090 N/A 0.153±0.00 0.387±0.00 N/A N/A N/A 0.139±0.00 N/A N/A N/A 0.034±0.00 0.066±0.01 N/A 0.204±0.00
ENST00000602906 1.729±0.00 1.590±0.00 N/A 4.754±0.00 2.376±0.00 6.175±0.00 2.935±0.00 1.658±1.64 0.709±0.00 2.497±0.00 0.032±0.00 0.661±0.50 0.070±0.03 4.197±0.00
ENSG00000242209 ENST00000491925 0.155±0.00 0.494±0.00 N/A 0.086±0.00 0.209±0.00 0.078±0.00 0.037±0.00 0.209±0.00 0.110±0.00 0.040±0.00 0.107±0.00 N/A N/A 0.183±0.00
ENSG00000246095 ENST00000501050 N/A 0.250±0.00 N/A N/A 0.044±0.03 0.768±0.00 N/A N/A N/A N/A N/A 0.102±0.06 N/A 4.324±0.00
ENST00000503938 0.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A 8.427±0.00
ENSG00000249148 ENST00000510061 0.167±0.00 0.406±0.00 N/A 0.116±0.00 0.029±0.00 N/A 0.201±0.12 0.086±0.00 0.077±0.00 N/A 0.103±0.00 0.157±0.09 N/A 0.154±0.00
ENSG00000250497 ENST00000508202 0.054±0.00 0.164±0.00 0.116±0.00 0.165±0.00 N/A N/A 0.374±0.04 N/A N/A N/A 0.006±0.00 0.040±0.00 0.008±0.00 0.129±0.00
ENSG00000250634 ENST00000503532 N/A 0.026±0.00 N/A N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A 0.202±0.00
ENST00000510907 N/A N/A 0.027±0.00 0.110±0.00 N/A N/A 0.065±0.06 0.049±0.00 0.016±0.00 N/A N/A N/A N/A 0.041±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029128 ENSMUST00000031011 14.510±4.95 67.852±33.67 21.846±2.30 15.607±6.15 17.738±6.57 26.928±3.34 4.998±1.30 16.404±2.90 8.243±1.56 29.733±4.82 5.998±0.78 19.674±6.98 7.178±2.57 21.178±6.20
ENSMUSG00000049691 ENSMUST00000060820 0.111±0.06 0.039±0.02 0.010±0.00 0.012±0.00 0.059±0.04 3.086±1.30 0.028±0.01 N/A 0.019±0.01 0.015±0.00 N/A 0.049±0.02 0.067±0.03 0.019±0.00
ENSMUSG00000061755 ENSMUST00000050556 0.516±0.23 3.733±1.07 1.772±0.83 3.105±1.65 2.208±0.85 1.684±0.43 0.557±0.29 0.763±0.37 1.735±1.51 2.100±1.04 0.994±0.15 4.101±1.49 5.428±1.53 3.187±3.47

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