C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: brain and reproductive organ-expressed (TNFRSF1A modulator)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158019 BRE 9606 + 2:27889941-28338901 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342045 BRE-004 27890792-28338901 protein_coding
  ENST00000344773 BRE-001 27890729-28338901 protein_coding
  ENST00000361704 BRE-005 27890793-28338901 protein_coding
  ENST00000379624 BRE-003 27890750-28338901 protein_coding
  ENST00000379629 BRE-009 27894545-28233315 protein_coding
  ENST00000379632 BRE-002 27890793-28338901 protein_coding
  ENST00000436924 BRE-006 27889941-28025385 protein_coding
  ENST00000492702 BRE-007 27890763-27895068 retained_intron
  ENST00000496951 BRE-008 27890787-27930361 retained_intron
  ENST00000603461 BRE-010 27890784-28025488 processed_transcript
  ENST00000604932 BRE-011 27894620-28025488 non_stop_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344773ENST00000361704ENST00000379624ENST00000379629ENST00000379632ENST00000436924ENST00000604932
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344773 5.154±0.00 7.839±0.00 N/A 5.845±0.00 3.580±0.00 4.221±0.00 N/A 9.735±0.00 N/A N/A 13.594±0.00 8.498±0.00 6.327±0.00 N/A
ENST00000361704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.121±0.00 5.635±0.00 6.702±0.00
ENST00000379624 8.855±0.00 8.200±0.00 N/A 8.161±1.91 5.206±1.56 6.392±0.00 17.412±0.00 11.149±9.67 5.870±3.58 4.781±0.00 11.202±6.83 13.459±8.54 18.276±1.91 10.503±0.00
ENST00000379629 N/A N/A N/A N/A 4.010±0.00 N/A N/A N/A N/A 6.430±0.00 N/A 3.204±0.00 N/A N/A
ENST00000379632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.353±0.00
ENST00000436924 7.654±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604932 N/A N/A 10.100±0.00 N/A N/A N/A N/A N/A 6.709±0.00 N/A N/A 6.977±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013J CIL_00013J_0001 CGP 2:27663471-27988087
CIL_00013K CIL_00013K_0001 CGP 2:27771717-27988087
CIL_0003JP CIL_0003JP_0002 CGP 2:27781364-28338901
CIL_0003JO CIL_0003JO_0002 CGP 2:27889941-28417312

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000152 IDA nuclear ubiquitin ligase complex
GO:0000268 TAS peroxisome targeting sequence binding
GO:0005164 IDA tumor necrosis factor receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006302 IMP double-strand break repair
GO:0006915 IEA apoptotic process
GO:0006974 IEP cellular response to DNA damage stimulus
GO:0007165 TAS signal transduction
GO:0010212 IMP response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 IMP G2 DNA damage checkpoint
GO:0031593 IDA polyubiquitin binding
GO:0045739 IMP positive regulation of DNA repair
GO:0070531 IDA BRCA1-A complex
GO:0070552 IDA BRISC complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038863 bre brain and reproductive organ-expressed protein protein_coding Danio_rerio
ENSMUSG00000052139 Bre brain and reproductive organ-expressed protein protein_coding Mus_musculus

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