C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: brain and reproductive organ-expressed protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052139 Bre 10090 + 5:31697684-32084962 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000063813 Bre-002 31698050-32084739 protein_coding
  ENSMUST00000071531 Bre-003 31698050-32084739 protein_coding
  ENSMUST00000080598 Bre-001 31697684-32084962 protein_coding
  ENSMUST00000114507 Bre-016 31698050-32084739 protein_coding
  ENSMUST00000114514 Bre-005 31698006-32002618 retained_intron
  ENSMUST00000114515 Bre-010 31698030-32084847 protein_coding
  ENSMUST00000125589 Bre-009 31701845-32057671 nonsense_mediated_decay
  ENSMUST00000128132 Bre-004 31698051-31820562 nonsense_mediated_decay
  ENSMUST00000130719 Bre-014 32045978-32084753 processed_transcript
  ENSMUST00000131995 Bre-007 31698050-32084739 protein_coding
  ENSMUST00000135978 Bre-013 31785383-31820643 processed_transcript
  ENSMUST00000147592 Bre-008 31698014-31831216 retained_intron
  ENSMUST00000152211 Bre-006 31697970-31731448 retained_intron
  ENSMUST00000155155 Bre-011 31697996-31707789 processed_transcript
  ENSMUST00000155888 Bre-015 32079697-32084746 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080598ENSMUST00000114507ENSMUST00000114515ENSMUST00000131995
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080598 23.870±7.01 46.027±5.64 27.641±2.63 10.379±4.29 18.464±0.90 11.352±1.04 9.433±1.08 20.097±2.06 10.681±4.15 14.974±1.71 8.398±1.57 15.968±6.16 9.113±4.03 28.989±4.43
ENSMUST00000114507 12.707±2.71 N/A 9.851±0.00 7.303±2.19 20.286±10.08 N/A 7.126±1.26 13.712±1.91 10.100±0.36 N/A N/A N/A N/A 13.115±0.25
ENSMUST00000114515 11.249±1.15 22.546±1.00 N/A N/A 11.132±6.81 6.039±1.18 N/A 9.196±0.89 6.624±1.68 7.383±0.00 N/A 11.595±1.01 3.862±0.00 N/A
ENSMUST00000131995 N/A N/A N/A N/A N/A N/A 5.260±0.00 N/A N/A N/A 6.896±0.92 18.797±0.03 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013J CIL_00013J_0002 CGP 5:31526995-31701972
CIL_00013K CIL_00013K_0002 CGP 5:31596935-31701972
CIL_0003JP CIL_0003JP_0003 CGP 5:31624439-32084962
CIL_0003JO CIL_0003JO_0003 CGP 5:31697684-32157831

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000152 ISS nuclear ubiquitin ligase complex
GO:0005164 IDA tumor necrosis factor receptor binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006302 ISS double-strand break repair
GO:0006915 IEA apoptotic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0010212 ISS response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 ISS G2 DNA damage checkpoint
GO:0031593 ISS polyubiquitin binding
GO:0045739 ISS positive regulation of DNA repair
GO:0070531 ISS BRCA1-A complex
GO:0070552 ISS BRISC complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038863 bre brain and reproductive organ-expressed protein protein_coding Danio_rerio
ENSG00000158019 BRE brain and reproductive organ-expressed (TNFRSF1A modulator) protein_coding Homo_sapiens

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