C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: scaffold attachment factor B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160633 SAFB 9606 + 19:5623035-5668478 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292123 SAFB-003 5623099-5668478 protein_coding
  ENST00000454510 SAFB-004 5623139-5668327 protein_coding
  ENST00000586281 SAFB-012 5664129-5664762 retained_intron
  ENST00000586934 SAFB-006 5623121-5653242 processed_transcript
  ENST00000588852 SAFB-002 5623153-5668326 protein_coding
  ENST00000589006 SAFB-011 5657325-5664136 protein_coding
  ENST00000589863 SAFB-005 5623035-5668349 nonsense_mediated_decay
  ENST00000590485 SAFB-007 5641851-5648404 retained_intron
  ENST00000591666 SAFB-008 5623083-5648187 retained_intron
  ENST00000591991 SAFB-014 5664726-5668471 retained_intron
  ENST00000592224 SAFB-001 5623118-5668466 protein_coding
  ENST00000592396 SAFB-010 5649684-5653420 retained_intron
  ENST00000592555 SAFB-013 5666656-5668478 retained_intron
  ENST00000592707 SAFB-009 5648855-5653264 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000292123ENST00000586934ENST00000588852ENST00000591991ENST00000592224
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000292123 9.555±0.00 8.558±0.00 N/A N/A 4.750±0.00 N/A N/A 0.659±0.00 N/A N/A N/A 11.054±2.44 7.152±2.39 7.792±0.00
ENST00000586934 N/A N/A N/A N/A N/A N/A 2.102±0.00 N/A 4.204±0.00 3.106±0.00 N/A N/A N/A N/A
ENST00000588852 17.642±0.00 14.005±0.00 3.896±0.00 15.156±13.33 11.919±0.00 11.866±10.91 8.071±0.00 19.457±0.00 1.747±0.00 8.777±7.25 18.854±0.00 6.423±5.49 15.866±0.00 24.961±11.75
ENST00000591991 N/A N/A N/A N/A 0.897±0.00 1.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592224 12.654±0.00 14.208±0.00 N/A 9.527±0.00 5.319±4.00 9.924±0.00 9.950±0.00 4.927±1.92 2.204±0.00 2.416±0.00 N/A 22.992±1.99 19.171±3.51 16.268±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0001 CGP 19:5455431-5624046
CIL_0003UZ CIL_0003UZ_0001 CGP 19:5586999-5668478

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 IEA core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0003682 IEA chromatin binding
GO:0003690 TAS double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0030520 IEA intracellular estrogen receptor signaling pathway
GO:0040007 IEA growth
GO:0042445 IEA hormone metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020467 safb scaffold attachment factor B protein_coding Danio_rerio
ENSMUSG00000071054 Safb scaffold attachment factor B protein_coding Mus_musculus

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