C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scaffold attachment factor B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592224 SAFB-001 ENSG00000160633 9606 + 19:5623118-5668466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000592224
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000592224 12.654±0.00 14.208±0.00 9.527±0.00 5.319±4.00 9.924±0.00 9.950±0.00 4.927±1.92 2.204±0.00 2.416±0.00 22.992±1.99 19.171±3.51 16.268±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0001 CGP 19:5455431-5624046
CIL_0003UZ CIL_0003UZ_0001 CGP 19:5586999-5668478

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003690 TAS double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182533 Safb-006 protein_coding Mus_musculus 0 1696
ENSMUST00000095224 Safb-001 protein_coding Mus_musculus 0 1663
ENSMUST00000182031 Safb-002 retained_intron Mus_musculus 0 575
ENSMUST00000133604 Safb2-004 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000075510 Safb2-001 protein_coding Mus_musculus 0 327
ENSMUST00000182378 Safb-004 retained_intron Mus_musculus 0 261
ENSMUST00000134741 Safb2-005 retained_intron Mus_musculus 9.99995e-41 172

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