C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: scaffold attachment factor B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071054 Safb 10090 + 17:56584825-56606294 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095224 Safb-001 56585059-56606294 protein_coding
  ENSMUST00000182031 Safb-002 56584825-56596523 retained_intron
  ENSMUST00000182159 Safb-003 56594514-56596511 retained_intron
  ENSMUST00000182378 Safb-004 56597770-56606280 retained_intron
  ENSMUST00000182454 Safb-005 56605222-56606294 retained_intron
  ENSMUST00000182461 Safb-009 56602970-56604543 retained_intron
  ENSMUST00000182533 Safb-006 56584974-56606219 protein_coding
  ENSMUST00000182800 Safb-011 56584982-56593720 protein_coding
  ENSMUST00000182913 Safb-007 56604359-56605653 retained_intron
  ENSMUST00000182951 Safb-012 56588840-56601240 nonsense_mediated_decay
  ENSMUST00000183041 Safb-010 56601397-56604408 retained_intron
  ENSMUST00000183318 Safb-008 56605740-56606274 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095224ENSMUST00000182031ENSMUST00000182378ENSMUST00000182533ENSMUST00000182951ENSMUST00000183041ENSMUST00000183318
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095224 6.957±0.49 2.631±0.00 11.923±4.71 35.195±19.38 4.353±0.30 5.203±0.76 6.162±0.78 5.855±2.25 11.091±9.55 7.783±0.84 6.605±1.24 17.667±24.41 28.135±19.04 24.266±29.35
ENSMUST00000182031 N/A 9.097±1.70 N/A N/A 3.896±0.00 N/A N/A N/A N/A 8.140±0.00 N/A 10.660±2.60 N/A N/A
ENSMUST00000182378 6.694±2.89 8.460±1.72 7.824±3.26 12.893±4.43 6.530±1.23 6.116±1.96 4.872±0.42 4.662±0.46 4.099±1.16 9.744±0.44 2.993±0.40 10.683±2.27 5.656±1.75 7.745±0.71
ENSMUST00000182533 4.612±1.63 N/A 3.706±0.37 6.760±0.54 6.335±0.00 4.374±0.00 3.098±0.00 3.421±0.60 3.915±1.53 5.631±0.79 3.095±0.68 10.224±3.52 6.689±3.01 7.231±0.43
ENSMUST00000182951 N/A N/A N/A 140.491±0.00 N/A N/A N/A N/A N/A N/A N/A 170.047±0.00 101.261±28.08 155.208±0.00
ENSMUST00000183041 N/A N/A N/A 254.062±0.00 N/A N/A N/A N/A N/A N/A N/A 170.261±148.48 183.127±42.34 N/A
ENSMUST00000183318 26.448±5.99 41.278±9.48 N/A N/A 33.614±7.84 34.837±8.52 N/A 26.437±3.13 N/A N/A N/A 43.472±3.23 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UZ CIL_0003UZ_0002 CGP 17:56560965-56606294

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 IDA core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0030520 IMP intracellular estrogen receptor signaling pathway
GO:0040007 IMP growth
GO:0042445 IMP hormone metabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020467 safb scaffold attachment factor B protein_coding Danio_rerio
ENSG00000160633 SAFB scaffold attachment factor B protein_coding Homo_sapiens

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