C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | scaffold attachment factor B | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000454510  |
SAFB-004 |
ENSG00000160633 |
9606 | + |
19:5623139-5668327  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0003JF | CIL_0003JF_0001 | CGP | 19:5455431-5624046 |
| CIL_0003UZ | CIL_0003UZ_0001 | CGP | 19:5586999-5668478 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0003676 | IEA | nucleic acid binding |
| GO:0003690 | TAS | double-stranded DNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0006325 | TAS | chromatin organization |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0044822 | IDA | poly(A) RNA binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000182533
|
Safb-006 | protein_coding | Mus_musculus | 0 | 1688 |
|
ENSMUST00000095224
|
Safb-001 | protein_coding | Mus_musculus | 0 | 1655 |
|
ENSMUST00000182031
|
Safb-002 | retained_intron | Mus_musculus | 0 | 418 |
|
ENSMUST00000133604
|
Safb2-004 | nonsense_mediated_decay | Mus_musculus | 0 | 327 |
|
ENSMUST00000075510
|
Safb2-001 | protein_coding | Mus_musculus | 0 | 327 |
|
ENSMUST00000182378
|
Safb-004 | retained_intron | Mus_musculus | 0 | 261 |
|
ENSMUST00000134741
|
Safb2-005 | retained_intron | Mus_musculus | 9.99995e-41 | 172 |
