C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403491 NFIA-001 ENSG00000162599 9606 + 1:61082308-61462793 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000403491
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000403491 6.647±0.00 5.506±0.00 1.804±0.00 4.603±3.33 4.968±0.50 6.136±0.36 6.285±3.10 5.983±2.42 8.302±4.80 3.051±1.18 2.247±1.18 5.790±4.25 0.705±0.42 4.453±2.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OH CIL_0007OH_0001 UCNEbase 1:60234802-61638594
CIL_0007QX CIL_0007QX_0001 VISTA 1:60321185-60922199
CIL_0001NA CIL_0001NA_0001 CGP 1:60865259-61725423

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IEA:NAS sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA:IDA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0019079 NAS viral genome replication
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092532 Nfia-201 protein_coding Mus_musculus 0 3306
ENSMUST00000052018 Nfia-004 protein_coding Mus_musculus 0 3306
ENSMUST00000107062 Nfia-003 protein_coding Mus_musculus 0 3306
ENSMUST00000107057 Nfia-002 protein_coding Mus_musculus 0 3306
ENSMUST00000075448 Nfia-001 protein_coding Mus_musculus 0 3306
ENSMUST00000148930 Nfia-007 protein_coding Mus_musculus 0 1173
ENSMUST00000152023 Nfia-005 protein_coding Mus_musculus 0 1003
ENSMUST00000133011 Nfia-006 processed_transcript Mus_musculus 0 811
ENSDART00000063467 nfia-201 protein_coding Danio_rerio 3e-22 113

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