C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermatogenesis associated 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163071 SPATA18 9606 + 4:52051331-52097292 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295213 SPATA18-001 52051331-52097292 protein_coding
  ENST00000419395 SPATA18-002 52051416-52095893 protein_coding
  ENST00000503055 SPATA18-008 52051461-52062324 nonsense_mediated_decay
  ENST00000505038 SPATA18-009 52051542-52072032 nonsense_mediated_decay
  ENST00000505320 SPATA18-004 52051461-52094887 nonsense_mediated_decay
  ENST00000506829 SPATA18-006 52051412-52072156 processed_transcript
  ENST00000508915 SPATA18-007 52051416-52072013 nonsense_mediated_decay
  ENST00000510549 SPATA18-010 52078344-52079900 retained_intron
  ENST00000511028 SPATA18-003 52051419-52082664 retained_intron
  ENST00000514670 SPATA18-005 52051409-52076946 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000295213ENST00000419395ENST00000503055ENST00000505038ENST00000505320ENST00000506829ENST00000510549ENST00000511028ENST00000514670
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000295213 0.072±0.00 N/A 0.168±0.12 N/A N/A 0.056±0.00 N/A 2.696±0.00 0.447±0.53 0.214±0.11 N/A
ENST00000419395 0.082±0.00 0.521±0.00 0.114±0.04 0.567±0.00 0.351±0.00 N/A 0.262±0.00 2.467±0.00 0.120±0.03 0.359±0.00 7.755±2.78
ENST00000503055 N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A N/A N/A N/A
ENST00000505038 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.513±0.00 N/A
ENST00000505320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.173±11.35
ENST00000506829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 85.410±0.00
ENST00000510549 N/A N/A N/A 1.983±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000511028 N/A N/A N/A 0.266±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000514670 N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CP CIL_0001CP_0001 CGP 4:52020706-52097292
CIL_0001CQ CIL_0001CQ_0001 CGP 4:52051331-52659335

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005741 IDA mitochondrial outer membrane
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0033554 IEA cellular response to stress
GO:0035694 IMP mitochondrial protein catabolic process
GO:0035695 IMP mitochondrion degradation by induced vacuole formation
GO:0036126 IEA sperm flagellum
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052343 spata18 spermatogenesis associated 18 protein_coding Danio_rerio
ENSMUSG00000029155 Spata18 spermatogenesis associated 18 protein_coding Mus_musculus

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