C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 175, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163322 FAM175A 9606 - 4:83459517-83523348 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321945 FAM175A-001 83459517-83485181 protein_coding
  ENST00000475656 FAM175A-002 83460945-83485103 nonsense_mediated_decay
  ENST00000503217 FAM175A-006 83470274-83485100 protein_coding
  ENST00000504777 FAM175A-003 83462075-83469901 retained_intron
  ENST00000505489 FAM175A-008 83467454-83523348 protein_coding
  ENST00000506553 FAM175A-009 83462009-83485555 protein_coding
  ENST00000511801 FAM175A-005 83470203-83485103 nonsense_mediated_decay
  ENST00000515303 FAM175A-004 83478808-83485065 protein_coding
  ENST00000611288 FAM175A-010 83463723-83470333 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321945ENST00000475656ENST00000506553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321945 1.650±0.00 N/A 0.889±0.00 N/A 0.825±0.00 N/A 0.906±0.00 0.604±0.19 N/A 0.588±0.00 1.988±0.00 2.868±0.09 N/A 2.321±0.00
ENST00000475656 4.588±0.00 3.692±0.00 N/A 1.687±0.00 3.023±0.02 2.911±1.20 1.411±0.50 1.475±1.08 N/A 2.051±0.12 3.468±2.74 4.063±2.48 1.363±0.05 7.234±1.22
ENST00000506553 N/A N/A N/A N/A N/A 0.983±0.00 N/A N/A 1.628±0.00 N/A N/A 1.399±0.00 1.224±0.00 10.721±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JA CIL_0006JA_0001 CGP 4:83407343-83469735
CIL_0006J9 CIL_0006J9_0001 CGP 4:83455932-83523348
CIL_0006J8 CIL_0006J8_0001 CGP 4:83459517-83605875

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006302 IMP double-strand break repair
GO:0010212 IMP response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 IMP G2 DNA damage checkpoint
GO:0031593 IDA polyubiquitin binding
GO:0045739 IMP positive regulation of DNA repair
GO:0070531 IDA BRCA1-A complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043339 fam175a family with sequence similarity 175, member A protein_coding Danio_rerio
ENSMUSG00000035234 Fam175a family with sequence similarity 175, member A protein_coding Mus_musculus

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