C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 175, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035234 Fam175a 10090 - 5:100805192-100820965 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044535 Fam175a-003 100805192-100820943 nonsense_mediated_decay
  ENSMUST00000055245 Fam175a-001 100805192-100820965 protein_coding
  ENSMUST00000117364 Fam175a-006 100805192-100820940 protein_coding
  ENSMUST00000129358 Fam175a-005 100809794-100820941 nonsense_mediated_decay
  ENSMUST00000131857 Fam175a-008 100818360-100820940 retained_intron
  ENSMUST00000145429 Fam175a-007 100806337-100807326 retained_intron
  ENSMUST00000145707 Fam175a-004 100817753-100820947 retained_intron
  ENSMUST00000153302 Fam175a-002 100805192-100820940 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055245ENSMUST00000117364ENSMUST00000129358ENSMUST00000131857ENSMUST00000145429ENSMUST00000153302
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055245 1.141±0.25 N/A 2.243±0.35 1.764±0.32 1.018±0.00 0.823±0.00 1.195±0.22 0.643±0.28 3.079±1.59 0.496±0.17 0.530±0.17 1.989±0.95 1.970±0.84 0.628±0.03
ENSMUST00000117364 3.946±2.12 1.425±0.29 3.979±0.53 1.787±0.59 1.528±0.30 1.643±0.50 2.981±0.60 2.002±0.51 3.739±1.98 0.777±0.18 1.417±0.18 2.965±1.36 5.928±3.33 2.776±1.03
ENSMUST00000129358 N/A N/A N/A N/A N/A N/A N/A N/A 1.399±0.00 N/A N/A N/A N/A N/A
ENSMUST00000131857 N/A N/A N/A N/A N/A 1.416±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145429 N/A N/A N/A 1.703±0.00 N/A N/A N/A N/A N/A N/A N/A 6.383±0.00 6.525±3.28 2.412±0.00
ENSMUST00000153302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.010±0.09 1.362±0.00 0.573±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000820 CIL_000820_0002 VISTA 5:100731954-101333223
CIL_0006J9 CIL_0006J9_0002 CGP 5:100798627-100820965
CIL_0006J8 CIL_0006J8_0002 CGP 5:100805192-100899102

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006302 ISS double-strand break repair
GO:0010212 ISS response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 ISS G2 DNA damage checkpoint
GO:0031593 ISS polyubiquitin binding
GO:0045739 ISS positive regulation of DNA repair
GO:0070531 ISS BRCA1-A complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043339 fam175a family with sequence similarity 175, member A protein_coding Danio_rerio
ENSG00000163322 FAM175A family with sequence similarity 175, member A protein_coding Homo_sapiens

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