C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VI, alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163359 COL6A3 9606 - 2:237324003-237414375 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295550 COL6A3-001 237324012-237414375 protein_coding
  ENST00000347401 COL6A3-201 237324085-237414148 protein_coding
  ENST00000353578 COL6A3-202 237324012-237414207 protein_coding
  ENST00000392003 COL6A3-003 237371617-237414207 protein_coding
  ENST00000392004 COL6A3-002 237371617-237414177 protein_coding
  ENST00000409809 COL6A3-011 237324774-237396817 protein_coding
  ENST00000433762 COL6A3-008 237377118-237414177 protein_coding
  ENST00000468792 COL6A3-010 237338940-237340602 retained_intron
  ENST00000472056 COL6A3-012 237324085-237414148 protein_coding
  ENST00000473258 COL6A3-005 237324003-237330180 processed_transcript
  ENST00000491233 COL6A3-004 237386454-237388077 protein_coding
  ENST00000491769 COL6A3-009 237324019-237355779 retained_intron
  ENST00000493475 COL6A3-007 237356790-237357883 retained_intron
  ENST00000493608 COL6A3-006 237332968-237334786 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295550ENST00000347401ENST00000353578ENST00000392003ENST00000472056ENST00000491769
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.309±0.00 N/A N/A N/A
ENST00000347401 N/A N/A 1.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000353578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.261±0.00 N/A
ENST00000392003 N/A N/A N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472056 111.207±0.00 34.681±0.00 N/A 0.843±0.00 33.207±6.83 31.489±17.00 15.213±12.03 5.382±3.69 19.335±16.87 19.614±10.81 7.890±5.35 46.475±24.26 54.811±21.62 19.634±15.14
ENST00000491769 N/A N/A 0.595±0.00 0.194±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.458±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0001 VISTA 2:237013177-237616630
CIL_0000XQ CIL_0000XQ_0001 CGP 2:237085312-237414375
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_000439 CIL_000439_0001 CGP 2:237324003-237555318

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005589 TAS collagen type VI trimer
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0007411 TAS axon guidance
GO:0007517 TAS muscle organ development
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0031982 IDA vesicle
GO:0042383 IEA sarcolemma
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077139 col6a3 collagen, type VI, alpha 3 protein_coding Danio_rerio
ENSMUSG00000048126 Col6a3 collagen, type VI, alpha 3 protein_coding Mus_musculus

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