C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chaperonin containing TCP1, subunit 3 (gamma)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163468 CCT3 9606 - 1:156308968-156367873 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295688 CCT3-001 156308968-156338465 protein_coding
  ENST00000368256 CCT3-008 156332653-156338311 processed_transcript
  ENST00000368258 CCT3-015 156308969-156338263 nonsense_mediated_decay
  ENST00000368259 CCT3-017 156308969-156338245 protein_coding
  ENST00000368261 CCT3-010 156308992-156325089 processed_transcript
  ENST00000368262 CCT3-016 156309014-156338247 nonsense_mediated_decay
  ENST00000413555 CCT3-014 156318870-156367859 protein_coding
  ENST00000415548 CCT3-011 156324980-156338214 protein_coding
  ENST00000446905 CCT3-013 156320840-156367873 protein_coding
  ENST00000463132 CCT3-012 156320839-156367837 processed_transcript
  ENST00000472765 CCT3-004 156309165-156338257 protein_coding
  ENST00000478640 CCT3-019 156320923-156338305 protein_coding
  ENST00000489870 CCT3-007 156335115-156338206 retained_intron
  ENST00000490221 CCT3-006 156320840-156336007 retained_intron
  ENST00000496684 CCT3-021 156318921-156338229 protein_coding
  ENST00000533194 CCT3-020 156318957-156338292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295688ENST00000368258ENST00000368259ENST00000368262ENST00000472765
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295688 5.977±0.00 N/A 2.557±0.00 8.334±3.40 7.594±0.00 8.925±2.73 4.206±1.87 3.943±0.00 3.993±0.00 N/A 8.769±0.00 39.616±18.22 58.841±12.75 16.150±0.00
ENST00000368258 25.465±0.00 46.037±0.00 1.316±0.00 20.386±0.00 27.407±0.00 47.071±0.00 18.622±0.00 29.402±21.72 28.036±0.00 33.473±0.00 35.109±0.00 85.275±39.96 38.493±20.18 66.138±11.12
ENST00000368259 20.876±0.00 28.912±0.00 N/A 27.947±0.00 26.161±0.00 31.690±0.00 6.300±0.00 62.361±0.00 22.090±0.00 12.055±0.00 11.144±0.00 98.893±0.00 45.372±0.00 42.929±2.11
ENST00000368262 N/A N/A N/A N/A N/A N/A 4.320±0.00 N/A 9.982±0.00 N/A 10.570±0.00 N/A N/A N/A
ENST00000472765 N/A N/A 1.239±0.00 9.687±0.00 10.139±0.00 10.877±0.00 1.006±0.00 N/A N/A N/A 4.956±0.00 30.156±0.00 N/A 26.636±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002199 IEA zona pellucida receptor complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005832 IEA chaperonin-containing T-complex
GO:0005856 TAS cytoskeleton
GO:0005874 IDA microtubule
GO:0005886 IDA plasma membrane
GO:0006457 IEA:TAS protein folding
GO:0007339 IEA binding of sperm to zona pellucida
GO:0044267 TAS:IEA cellular protein metabolic process
GO:0044297 IEA cell body
GO:0044822 IDA poly(A) RNA binding
GO:0046931 IEA pore complex assembly
GO:0051082 IEA unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0070062 IDA extracellular vesicular exosome
GO:1901998 IEA toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016173 cct3 chaperonin containing TCP1, subunit 3 (gamma) protein_coding Danio_rerio
ENSMUSG00000001416 Cct3 chaperonin containing Tcp1, subunit 3 (gamma) protein_coding Mus_musculus

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