C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chaperonin containing TCP1, subunit 3 (gamma)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472765 CCT3-004 ENSG00000163468 9606 - 1:156309165-156338257 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartMuscleOvaryTestisENST00000472765
Transcript ID Bladder Brain Breast Colon Heart Muscle Ovary Testis
ENST00000472765 1.239±0.00 9.687±0.00 10.139±0.00 10.877±0.00 1.006±0.00 4.956±0.00 30.156±0.00 26.636±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006457 IEA protein folding
GO:0044267 IEA cellular protein metabolic process
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001452 Cct3-001 protein_coding Mus_musculus 0 2080
ENSMUST00000168062 Cct3-005 protein_coding Mus_musculus 0 1940
ENSMUST00000164166 Cct3-006 protein_coding Mus_musculus 0 1834
ENSMUST00000167718 Cct3-004 retained_intron Mus_musculus 0 1805
ENSMUST00000118023 Cct3-ps1-001 processed_pseudogene Mus_musculus 0 1600
ENSMUST00000118450 Gm11516-001 processed_pseudogene Mus_musculus 0 1463
ENSMUST00000167000 Cct3-002 retained_intron Mus_musculus 0 1088
ENSMUST00000164783 Cct3-003 retained_intron Mus_musculus 0 1066
ENSMUST00000163735 Cct3-007 protein_coding Mus_musculus 0 795

Loading