C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chaperonin containing TCP1, subunit 3 (gamma)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368258 CCT3-015 ENSG00000163468 9606 - 1:156308969-156338263 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368258
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368258 25.465±0.00 46.037±0.00 1.316±0.00 20.386±0.00 27.407±0.00 47.071±0.00 18.622±0.00 29.402±21.72 28.036±0.00 33.473±0.00 35.109±0.00 85.275±39.96 38.493±20.18 66.138±11.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001452 Cct3-001 protein_coding Mus_musculus 0 2193
ENSMUST00000164166 Cct3-006 protein_coding Mus_musculus 0 2036
ENSMUST00000168062 Cct3-005 protein_coding Mus_musculus 0 1851
ENSMUST00000167718 Cct3-004 retained_intron Mus_musculus 0 1805
ENSMUST00000118023 Cct3-ps1-001 processed_pseudogene Mus_musculus 0 1520
ENSMUST00000118450 Gm11516-001 processed_pseudogene Mus_musculus 0 1426
ENSMUST00000167000 Cct3-002 retained_intron Mus_musculus 0 1088
ENSMUST00000164783 Cct3-003 retained_intron Mus_musculus 0 1066
ENSMUST00000163735 Cct3-007 protein_coding Mus_musculus 0 795

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