C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295971 RBM47-006 ENSG00000163694 9606 - 4:40424338-40629864 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000295971
Transcript ID Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000295971 5.048±0.00 3.405±0.00 8.439±0.00 4.688±0.00 0.775±0.00 5.333±0.00 5.239±0.41 14.621±0.00 1.992±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Q CIL_00038Q_0001 CGP 4:40423267-40809985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094757 Rbm47-004 protein_coding Mus_musculus 0 2464
ENSMUST00000167950 Rbm47-201 protein_coding Mus_musculus 0 2381
ENSMUST00000113726 Rbm47-001 protein_coding Mus_musculus 0 2381
ENSMUST00000113724 Rbm47-002 protein_coding Mus_musculus 0 2359
ENSMUST00000094756 Rbm47-005 protein_coding Mus_musculus 0 2326
ENSMUST00000132606 Rbm47-007 retained_intron Mus_musculus 0 1554
ENSMUST00000113725 Rbm47-006 protein_coding Mus_musculus 0 1554
ENSMUST00000145625 Rbm47-011 protein_coding Mus_musculus 0 617
ENSMUST00000127275 Rbm47-003 protein_coding Mus_musculus 4e-27 128
ENSMUST00000131838 Rbm47-010 protein_coding Mus_musculus 3e-24 119

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