C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stem-loop binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163950 SLBP 9606 - 4:1692800-1712555 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318386 SLBP-004 1692858-1712250 protein_coding
  ENST00000429429 SLBP-002 1692800-1712318 protein_coding
  ENST00000480936 SLBP-006 1696295-1712344 protein_coding
  ENST00000483348 SLBP-007 1693244-1712018 protein_coding
  ENST00000488267 SLBP-003 1693447-1712317 protein_coding
  ENST00000489418 SLBP-001 1692800-1712555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318386ENST00000429429ENST00000480936ENST00000483348ENST00000488267ENST00000489418
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.694±0.00 N/A N/A
ENST00000429429 4.333±0.00 3.856±0.00 0.478±0.00 6.431±0.00 3.098±0.00 3.946±2.32 N/A 0.784±0.00 N/A 0.672±0.00 N/A 4.113±3.25 4.980±1.35 N/A
ENST00000480936 N/A N/A 1.268±0.00 N/A 3.460±0.00 N/A N/A N/A 2.202±0.00 N/A 1.118±0.00 5.809±0.00 N/A N/A
ENST00000483348 N/A N/A N/A N/A N/A N/A 1.663±0.00 N/A 2.175±0.00 4.161±0.00 3.296±0.00 N/A N/A N/A
ENST00000488267 4.395±0.00 N/A N/A 11.682±0.00 5.507±0.00 3.104±2.05 1.357±0.00 8.169±0.00 1.146±0.00 7.034±0.00 N/A 19.178±0.00 31.103±0.00 45.724±0.00
ENST00000489418 4.685±0.00 9.370±0.00 1.067±0.00 2.313±0.00 5.061±3.43 2.820±1.68 1.679±1.55 8.914±6.53 6.403±0.00 4.734±3.11 2.703±1.10 9.701±5.28 17.073±2.88 30.494±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006LX CIL_0006LX_0001 CGP 4:1617915-1712555
CIL_0006V4 CIL_0006V4_0001 CGP 4:1692800-1721358

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006398 ISS histone mRNA 3'-end processing
GO:0006406 TAS mRNA export from nucleus
GO:0008334 TAS histone mRNA metabolic process
GO:0010467 TAS gene expression
GO:0030529 TAS ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0033260 IMP nuclear cell cycle DNA replication
GO:0044822 IDA poly(A) RNA binding
GO:0051028 IDA mRNA transport
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071207 ISS histone pre-mRNA stem-loop binding
GO:0071208 ISS histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004926 slbp stem-loop binding protein protein_coding Danio_rerio
ENSMUSG00000004642 Slbp stem-loop binding protein protein_coding Mus_musculus

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