C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stem-loop binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488267 SLBP-003 ENSG00000163950 9606 - 4:1693447-1712317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000488267
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000488267 4.395±0.00 11.682±0.00 5.507±0.00 3.104±2.05 1.357±0.00 8.169±0.00 1.146±0.00 7.034±0.00 19.178±0.00 31.103±0.00 45.724±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006LX CIL_0006LX_0001 CGP 4:1617915-1712555
CIL_0006V4 CIL_0006V4_0001 CGP 4:1692800-1721358

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057551 Slbp-001 protein_coding Mus_musculus 0 582
ENSMUST00000101354 Slbp-002 protein_coding Mus_musculus 0 529
ENSMUST00000057361 Gm8396-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000075670 Slbp-003 protein_coding Mus_musculus 0 429
ENSMUST00000139518 Slbp-009 retained_intron Mus_musculus 0 409
ENSMUST00000143003 Slbp-008 retained_intron Mus_musculus 0 374
ENSMUST00000146889 Slbp-010 retained_intron Mus_musculus 0 213

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