C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stem-loop binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480936 SLBP-006 ENSG00000163950 9606 - 4:1696295-1712344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLiverMuscleOvaryENST00000480936
Transcript ID Bladder Breast Liver Muscle Ovary
ENST00000480936 1.268±0.00 3.460±0.00 2.202±0.00 1.118±0.00 5.809±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006LX CIL_0006LX_0001 CGP 4:1617915-1712555
CIL_0006V4 CIL_0006V4_0001 CGP 4:1692800-1721358

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139518 Slbp-009 retained_intron Mus_musculus 0 444
ENSMUST00000057551 Slbp-001 protein_coding Mus_musculus 0 444
ENSMUST00000075670 Slbp-003 protein_coding Mus_musculus 0 444
ENSMUST00000057361 Gm8396-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000151081 Slbp-006 protein_coding Mus_musculus 0 239
ENSMUST00000101354 Slbp-002 protein_coding Mus_musculus 0 228
ENSMUST00000148153 Slbp-007 retained_intron Mus_musculus 0 222
ENSMUST00000143029 Slbp-004 retained_intron Mus_musculus 1e-39 167

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