C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stem-loop binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489418 SLBP-001 ENSG00000163950 9606 - 4:1692800-1712555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000489418
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000489418 4.685±0.00 9.370±0.00 1.067±0.00 2.313±0.00 5.061±3.43 2.820±1.68 1.679±1.55 8.914±6.53 6.403±0.00 4.734±3.11 2.703±1.10 9.701±5.28 17.073±2.88 30.494±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006LX CIL_0006LX_0001 CGP 4:1617915-1712555
CIL_0006V4 CIL_0006V4_0001 CGP 4:1692800-1721358

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006398 ISS histone mRNA 3'-end processing
GO:0006406 TAS mRNA export from nucleus
GO:0008334 TAS histone mRNA metabolic process
GO:0010467 TAS gene expression
GO:0030529 TAS ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0033260 IMP nuclear cell cycle DNA replication
GO:0044822 IDA poly(A) RNA binding
GO:0051028 IDA mRNA transport
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071207 ISS histone pre-mRNA stem-loop binding
GO:0071208 ISS histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057551 Slbp-001 protein_coding Mus_musculus 0 828
ENSMUST00000057361 Gm8396-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000075670 Slbp-003 protein_coding Mus_musculus 0 675
ENSMUST00000139518 Slbp-009 retained_intron Mus_musculus 0 654
ENSMUST00000101354 Slbp-002 protein_coding Mus_musculus 0 529
ENSMUST00000143003 Slbp-008 retained_intron Mus_musculus 0 374
ENSMUST00000148153 Slbp-007 retained_intron Mus_musculus 0 305
ENSMUST00000151081 Slbp-006 protein_coding Mus_musculus 0 300
ENSMUST00000143029 Slbp-004 retained_intron Mus_musculus 0 228
ENSMUST00000146889 Slbp-010 retained_intron Mus_musculus 0 213

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