C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stem-loop binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004642 Slbp 10090 - 5:33634952-33652574 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057551 Slbp-001 33640055-33652574 protein_coding
  ENSMUST00000075670 Slbp-003 33634952-33652345 protein_coding
  ENSMUST00000101354 Slbp-002 33640055-33652306 protein_coding
  ENSMUST00000126581 Slbp-005 33651625-33652301 retained_intron
  ENSMUST00000139518 Slbp-009 33643481-33652300 retained_intron
  ENSMUST00000143003 Slbp-008 33641941-33645801 retained_intron
  ENSMUST00000143029 Slbp-004 33648662-33652353 retained_intron
  ENSMUST00000146889 Slbp-010 33640386-33642162 retained_intron
  ENSMUST00000148153 Slbp-007 33645628-33652338 retained_intron
  ENSMUST00000151081 Slbp-006 33645629-33652296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057551ENSMUST00000075670ENSMUST00000101354ENSMUST00000126581ENSMUST00000139518ENSMUST00000146889ENSMUST00000148153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057551 2.132±0.85 1.972±0.78 11.232±1.62 16.101±8.85 3.645±0.65 2.210±0.00 2.301±0.70 2.872±1.23 59.298±50.51 2.778±0.54 2.456±0.33 8.440±7.28 26.419±10.76 16.078±0.75
ENSMUST00000075670 1.769±0.00 2.993±0.74 N/A N/A 2.362±0.14 4.440±1.00 N/A 2.000±0.63 2.447±0.36 N/A N/A 5.579±0.09 N/A 30.701±7.86
ENSMUST00000101354 2.896±1.08 N/A N/A 4.185±0.97 0.827±0.00 4.767±1.22 1.745±0.74 2.665±1.42 1.734±0.51 4.030±1.24 0.387±0.00 7.505±3.52 20.576±7.84 N/A
ENSMUST00000126581 N/A N/A N/A N/A N/A 3.936±0.00 N/A N/A N/A N/A N/A 12.102±0.00 N/A N/A
ENSMUST00000139518 2.674±0.00 N/A N/A N/A N/A N/A 1.430±0.00 1.717±0.00 0.803±0.00 N/A N/A N/A N/A N/A
ENSMUST00000146889 N/A N/A N/A N/A 3.030±1.03 N/A 1.091±0.00 N/A 1.719±0.00 N/A N/A N/A N/A N/A
ENSMUST00000148153 6.467±2.35 20.482±5.56 N/A N/A 24.863±11.89 23.082±8.09 2.237±0.00 6.718±4.87 2.074±0.45 12.647±4.47 N/A 49.999±13.64 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LX CIL_0006LX_0002 CGP 5:33600351-33652574
CIL_0006V4 CIL_0006V4_0002 CGP 5:33634952-33657977

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA:ISS nucleus
GO:0005737 IDA:ISS cytoplasm
GO:0006398 IDA histone mRNA 3'-end processing
GO:0030529 IDA ribonucleoprotein complex
GO:0033260 ISS nuclear cell cycle DNA replication
GO:0044822 IEA poly(A) RNA binding
GO:0051028 ISS mRNA transport
GO:0071204 IDA histone pre-mRNA 3'end processing complex
GO:0071207 IDA histone pre-mRNA stem-loop binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004926 slbp stem-loop binding protein protein_coding Danio_rerio
ENSG00000163950 SLBP stem-loop binding protein protein_coding Homo_sapiens

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