C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PC4 and SFRS1 interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164985 PSIP1 9606 - 9:15464066-15511019 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380715 PSIP1-006 15470636-15510991 protein_coding
  ENST00000380716 PSIP1-007 15470636-15510994 protein_coding
  ENST00000380733 PSIP1-003 15464066-15511019 protein_coding
  ENST00000380738 PSIP1-004 15464066-15510995 protein_coding
  ENST00000397519 PSIP1-201 15470646-15510289 protein_coding
  ENST00000463712 PSIP1-010 15489270-15510946 processed_transcript
  ENST00000481862 PSIP1-005 15470990-15472750 protein_coding
  ENST00000484265 PSIP1-008 15504959-15510989 processed_transcript
  ENST00000487363 PSIP1-009 15485903-15510289 processed_transcript
  ENST00000488797 PSIP1-001 15491952-15510991 processed_transcript
  ENST00000495873 PSIP1-002 15472081-15474201 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380715ENST00000380733ENST00000380738ENST00000397519ENST00000495873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380715 N/A N/A 1.927±0.00 9.498±0.00 N/A N/A N/A N/A N/A 2.503±0.00 N/A N/A N/A N/A
ENST00000380733 3.134±0.00 N/A N/A 4.251±0.00 5.914±2.78 N/A 3.394±2.40 6.158±5.08 5.161±0.00 6.265±0.00 0.596±0.00 7.907±3.74 5.305±0.00 27.348±0.00
ENST00000380738 8.525±0.00 22.634±0.00 2.332±0.00 23.340±0.00 N/A 17.799±13.27 N/A N/A 2.332±0.00 4.647±1.65 6.192±0.00 14.314±8.83 12.770±7.29 38.832±0.00
ENST00000397519 N/A N/A N/A 28.162±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.917±0.00
ENST00000495873 N/A N/A N/A 12.866±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0001 CGP 9:15163622-15465953
CIL_0005UX CIL_0005UX_0002 CGP 9:15422704-15511019
CIL_00051U CIL_00051U_0002 CGP 9:15464066-16061663

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000395 IDA mRNA 5'-splice site recognition
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005720 IDA nuclear heterochromatin
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006979 ISS response to oxidative stress
GO:0009408 ISS response to heat
GO:0016032 TAS viral process
GO:0033613 IDA activating transcription factor binding
GO:0034399 IDA nuclear periphery
GO:0035327 ISS transcriptionally active chromatin
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0075713 TAS establishment of integrated proviral latency
GO:0097100 ISS supercoiled DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018745 psip1 PC4 and SFRS1 interacting protein 1 protein_coding Danio_rerio
ENSDARG00000019045 WU:FC32F04 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077405 si:ch211-116m6.3 PC4 and SFRS1 interacting protein 1 protein_coding Danio_rerio
ENSMUSG00000028484 Psip1 PC4 and SFRS1 interacting protein 1 protein_coding Mus_musculus

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