C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PC4 and SFRS1 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380738 PSIP1-004 ENSG00000164985 9606 - 9:15464066-15510995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonLiverLungMuscleOvaryPlacentaTestisENST00000380738
Transcript ID Adipose Adrenal Bladder Brain Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000380738 8.525±0.00 22.634±0.00 2.332±0.00 23.340±0.00 17.799±13.27 2.332±0.00 4.647±1.65 6.192±0.00 14.314±8.83 12.770±7.29 38.832±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0001 CGP 9:15163622-15465953
CIL_0005UX CIL_0005UX_0002 CGP 9:15422704-15511019
CIL_00051U CIL_00051U_0002 CGP 9:15464066-16061663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000395 IDA mRNA 5'-splice site recognition
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005720 IDA nuclear heterochromatin
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006979 ISS response to oxidative stress
GO:0009408 ISS response to heat
GO:0016032 TAS viral process
GO:0033613 IDA activating transcription factor binding
GO:0034399 IDA nuclear periphery
GO:0035327 ISS transcriptionally active chromatin
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0075713 TAS establishment of integrated proviral latency
GO:0097100 ISS supercoiled DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030207 Psip1-001 protein_coding Mus_musculus 0 2468
ENSMUST00000118665 Gm15773-001 processed_pseudogene Mus_musculus 0 1707
ENSMUST00000107215 Psip1-002 protein_coding Mus_musculus 0 1465
ENSMUST00000107214 Psip1-003 protein_coding Mus_musculus 0 1458
ENSMUST00000130626 Psip1-006 protein_coding Mus_musculus 0 523
ENSMUST00000152382 Psip1-008 retained_intron Mus_musculus 0 398
ENSMUST00000123262 Snapc3-005 nonsense_mediated_decay Mus_musculus 4e-27 128

Loading